View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_high_1 (Length: 526)
Name: NF3335_high_1
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Original strand, 28864795 - 28865313
Alignment:
| Q |
18 |
aaatgataacaaaaatgcatatttagagactactttatatttaatattgaatcatgactattgtggcagcgaggtgcgtat----------caaaatgac |
107 |
Q |
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| T |
28864795 |
aaatgataacaaaagtgcatattcagagactactttgtatttaatattgaatcaggacttttgtgacagcgaggtgcgtataatcaggtatcaaaatgac |
28864894 |
T |
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| Q |
108 |
tatttactcttgtatataagaagagagagttcttccacttctacatacaacttctctcaatagtcaattggtatt-------ttctttgcagagaccaac |
200 |
Q |
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| T |
28864895 |
tatttactcttgtatataagaagagagagttcttctacttctacatacaacttctctcaatagtcaattggtattcttttttttttttgcagagaccaac |
28864994 |
T |
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| Q |
201 |
tatttttactcattcttgttgggtggacaaatataactacgagttgacgaaacaatatagtctagaaagacatgaatgtttggaagcatacga---gtgc |
297 |
Q |
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| T |
28864995 |
tatttttactcattcttgttgggtggacaaatatgactacgagttgaagaaacaatatagtctagaaagacatgaatgtttggaagcatactacgcgtgc |
28865094 |
T |
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| Q |
298 |
aaaacacaaaattcccttgtaagaaaacaaacaaacgaatgtgtcataaaacaaagcacataccgtatcaaagcataaatgtaaacgccgtcctatactt |
397 |
Q |
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| T |
28865095 |
aaaactaaaaattccattgtaagaaaacaaacaaacaaatgtgtcataaaacaaagcacataccgtatcaa-gcattaatgtaaacgccgtcctatactt |
28865193 |
T |
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| Q |
398 |
tgctttcttacctgtaacgcgtttatccaacacgtcaaatagaatttttccatttgcattaaggaaccatatagtatatatatacacatttttgcttcca |
497 |
Q |
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| T |
28865194 |
tgctttcttacctgtaacgcgtttatccaacacgtcaaatagaatttttccatttgcattaaggaaccatatag--tatatatacacatttttgcttcca |
28865291 |
T |
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| Q |
498 |
ta-ttttcaatcacataactac |
518 |
Q |
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| T |
28865292 |
tatttttcaatcacataactac |
28865313 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 30360495 - 30360536
Alignment:
| Q |
30 |
aaatgcatatttagagactactttatatttaatattgaatca |
71 |
Q |
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| T |
30360495 |
aaatgcacatttagagactactttatatttaacattgaatca |
30360536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 18617157 - 18617105
Alignment:
| Q |
474 |
tatatatacacatttttgcttccatattttcaatcacataactaccaattcca |
526 |
Q |
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| T |
18617157 |
tatatatacacttttttccttctatattttcaaccacattactaccaattcca |
18617105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 12676491 - 12676532
Alignment:
| Q |
21 |
tgataacaaaaatgcatatttagagactactttatatttaat |
62 |
Q |
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| T |
12676491 |
tgataacaaaagtgcacatttagagactactttgtatttaat |
12676532 |
T |
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