View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_high_14 (Length: 308)
Name: NF3335_high_14
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 37806204 - 37806486
Alignment:
| Q |
17 |
tggtacatgtcctctatccttcaattattatatcttattaatgtatagatcaacacacaaccactcaatggtagtagtacaagtacgacaggctgctagc |
116 |
Q |
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| T |
37806204 |
tggtacatatcctctatccttcaattattatatcttattaatgtatagatcaacacacaaccactcactggtagtagtacaagtacgacaggctgctagc |
37806303 |
T |
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| Q |
117 |
caatagttttttcttgtgatcaaaatgctggccaataaaattaaaag----nnnnnnnnnnnngttgttaattctgttat-gatttag--aataaggttt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||||| |
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| T |
37806304 |
caatagttttttcttgtgatcaaaatgctggccaataaaattaaaaggtttttttttttttttgttgttaattctgttataaatttagaaaaaaaggttt |
37806403 |
T |
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| Q |
210 |
ctgataatttgatgagtttgagagaattattttgggtacgttcatgcaatgcaacacaggcttttgtttgaacgcttgttatt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
37806404 |
ctgataatttgatgagtttgagagaattattttgggtacgtacatgcaatgcaacacaggctttagtttgaacgcttgttatt |
37806486 |
T |
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