View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3335_high_23 (Length: 242)
Name: NF3335_high_23
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_high_23 |
 | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 31770349 - 31770127
Alignment:
| Q |
1 |
cctcttctattaggtcggaatttatcttactagatggttctatcaaaatagattctacgttagagctttcctttggtaagaaatgtgcagttttgaaatt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31770349 |
cctcttctattaggtcagaatttatcttactagatggttctatcaaaatagattctacgttagagctttcctttggtaagaaatgtgcagttttgaaatt |
31770250 |
T |
|
| Q |
101 |
tgcagtcatttaat---------atttataggaatgaatatgaagtgtttttgtttctcttgcaaaaatttcatactatactgatacatatgctaatatg |
191 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31770249 |
tgcagtcatttaattgacatctgatttataggaatgaatatgaagtgtttttgtttctcttgcaaaaatttcatactatactgatacatatgctaatatg |
31770150 |
T |
|
| Q |
192 |
gttactttggaaaagttttgtaa |
214 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31770149 |
gttactttggaaaagttttgtaa |
31770127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 7607789 - 7607567
Alignment:
| Q |
1 |
cctcttctattaggtcggaatttatcttactagatggttctatcaaaatagattctacgttagagctttcctttggtaagaaatgtgcagttttgaaatt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7607789 |
cctcttctattaggtcataatttatcttactagatggttctatcaaaatagattctacgttagagctttcctttggtaagaaatgtgcagttttgaaatt |
7607690 |
T |
|
| Q |
101 |
tgcagtcatttaat---------atttataggaatgaatatgaagtgtttttgtttctcttgcaaaaatttcatactatactgatacatatgctaatatg |
191 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7607689 |
tgaagtcatttaattgacatctgatttataggaatgaatatgaagtgtttttgtttctcttacaaaaatttcatactatactgatacatatgctaatatg |
7607590 |
T |
|
| Q |
192 |
gttactttggaaaagttttgtaa |
214 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
7607589 |
gttactttgaaaaagttttgtaa |
7607567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 14185003 - 14185087
Alignment:
| Q |
1 |
cctcttctattaggtcggaatttatcttactagatggttctatcaaaatagattctacgttagagctttcctttggtaagaaatg |
85 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14185003 |
cctcttctattaggtcagaatttatcttactagatggttctatcaaaatagattctacgttagagctttcctttggtaagaaatg |
14185087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 212
Target Start/End: Original strand, 14185191 - 14185325
Alignment:
| Q |
81 |
aaatgtgcagttttgaaatttgcagtcatttaat---------atttataggaatgaatatgaagtgtttttgtttctcttgcaaaaatttcatactata |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
14185191 |
aaatgtgcagttttgaaatttgcagtcatttaattgacatctgatttataggaatgaatatgaagtgttt------ctcttaaaaaaatttcatactata |
14185284 |
T |
|
| Q |
172 |
ctgatacatatgctaatatggttactttggaaaagttttgt |
212 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
14185285 |
ctgatacatctgctaacatggttactttggaaaagttttgt |
14185325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 30113294 - 30113196
Alignment:
| Q |
115 |
atttataggaatgaatatgaagtgtttttgtttctcttgcaaaaatttcatactatactgatacatatgctaatatggttactttggaaaagttttgtaa |
214 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| ||||||| || || || |||||||| ||||||| |||| |||||||||| ||||||||| |
|
|
| T |
30113294 |
atttataggtatgaatattaagtgtttttgtttctcttgc-aaaattttattctgtattgatacatctgctaatttggtaactttggaaaggttttgtaa |
30113196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12537904 - 12537848
Alignment:
| Q |
1 |
cctcttctattaggtcggaatttatcttactagatggttctatcaaaatagattcta |
57 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
12537904 |
cctcttctattaggtcagaatttatcttacttgatggttctatcaaaatggattcta |
12537848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28678 - 28734
Alignment:
| Q |
1 |
cctcttctattaggtcggaatttatcttactagatggttctatcaaaatagattcta |
57 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
28678 |
cctcttctattaggtcagaatctatcttacttgatggttctatcaaaatggattcta |
28734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 32279945 - 32280029
Alignment:
| Q |
1 |
cctcttctattaggtcggaatttatcttactagatggttctatcaaaatagattctacgttagagctttcctttggtaagaaatg |
85 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |||||||||||||| | ||||||| | ||||||| |||||| |||||||| |
|
|
| T |
32279945 |
cctcttctattaggtcataatttttcttactcaatggttctatcaaattggattctaaatctgagcttttctttggcaagaaatg |
32280029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University