View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_high_25 (Length: 239)
Name: NF3335_high_25
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 44558646 - 44558882
Alignment:
| Q |
1 |
aaactaatcttaaactatttccacattttaatttacttccaatgtttataattagtctgcttttcacaaatgtagtaaaacactaatattgcgtttgatt |
100 |
Q |
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| T |
44558646 |
aaactaatcttaaactatttccacattttaatttacctccaatgcttataattagtctgcttttcacaaatgtagtaaaacactaacattgcgtttgatt |
44558745 |
T |
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| Q |
101 |
gtacaaagagataaatgcatgtg------------catgtgatattcattcttttgaatagcacgttttacattcgtgagttataaaagacatttattta |
188 |
Q |
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| T |
44558746 |
gtacaaagagataaatgcatgtgatattcattcatcaattttttttctttcttttgaatagcacgtttcacattcgtgagttataaaagacatttattta |
44558845 |
T |
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| Q |
189 |
cattagacttaaattcattttgatgaaatgaaatttt |
225 |
Q |
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| T |
44558846 |
cattagacttaaattcattttgatgaaatgaaatttt |
44558882 |
T |
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