View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_high_27 (Length: 233)
Name: NF3335_high_27
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31770642 - 31770868
Alignment:
| Q |
1 |
ccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaataagaaatggatggagcgacccttgtatcgaaggtgctggtaagnnnn |
100 |
Q |
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| T |
31770642 |
ccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaaa |
31770741 |
T |
|
| Q |
101 |
nnnnnnnnnnncaacatcaggaagatatacagtacagaaataacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatata |
200 |
Q |
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| T |
31770742 |
aaccaaaaaaacaacatcaggaagatatacagtacagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtaggaaagcaatata |
31770841 |
T |
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| Q |
201 |
tctacaatacttctcatttgatgatgt |
227 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
31770842 |
tctacaatacttctcatttgaagatgt |
31770868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41810673 - 41810447
Alignment:
| Q |
1 |
ccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaataagaaatggatggagcgacccttgtatcgaaggtgctggtaagnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41810673 |
ccaccgttacgaagacttcaatggcaacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaaa |
41810574 |
T |
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| Q |
101 |
nnnnnnnnnnncaacatcaggaagatatacagtacagaaataacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatata |
200 |
Q |
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| T |
41810573 |
aaccaaaaaaacaacatcaggaagatatacagtacagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtagtaaagcaatata |
41810474 |
T |
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| Q |
201 |
tctacaatacttctcatttgatgatgt |
227 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
41810473 |
tctacaatacttctcatttgaagatgt |
41810447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 16253096 - 16253157
Alignment:
| Q |
24 |
gcaacgaaatcggaaaagttcaatgcgaataagaaatggatggagcgacccttgtatcgaag |
85 |
Q |
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| T |
16253096 |
gcaacgaaatcggaaaagtgcaatgcggtgaagaaatggatggagcgaaccttgaatcgaag |
16253157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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