View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3335_high_4 (Length: 444)

Name: NF3335_high_4
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3335_high_4
NF3335_high_4
[»] chr4 (9 HSPs)
chr4 (17-437)||(5998834-5999254)
chr4 (17-309)||(5629881-5630158)
chr4 (18-294)||(5436993-5437266)
chr4 (129-302)||(5458326-5458499)
chr4 (18-92)||(5487457-5487531)
chr4 (336-395)||(37496775-37496834)
chr4 (339-386)||(39619045-39619092)
chr4 (25-90)||(5447422-5447487)
chr4 (169-225)||(5508842-5508898)
[»] chr2 (1 HSPs)
chr2 (336-428)||(43585945-43586038)
[»] chr8 (1 HSPs)
chr8 (340-428)||(34073922-34074011)
[»] chr7 (3 HSPs)
chr7 (336-428)||(25956471-25956563)
chr7 (339-371)||(10702456-10702488)
chr7 (344-384)||(28224863-28224903)
[»] chr6 (2 HSPs)
chr6 (336-385)||(785384-785433)
chr6 (336-400)||(26178538-26178602)
[»] chr3 (1 HSPs)
chr3 (400-436)||(37077376-37077412)
[»] chr1 (1 HSPs)
chr1 (333-365)||(18945968-18946000)


Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 5999254 - 5998834
Alignment:
Q  17 agtttacaacttttcagaatcttgattgtacttgtggaaaacccactaataaacagcctaataatttggattctgagggactggggaatagtggtggtat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  5999254 agtttacaacttttcagaatcttgattgtacttgtggaaaacccactaataaacagcctaatagtttggattctgagggacaggggaatagtggtggtat 5999155  T
Q  117 tgctgatgctttaaatggggtttttgttaaggacaatgggtcgttgtttttggtgtatgatgatttgaagattgtgcctagttctttggtgagttccatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5999154 tgctgatgctttaaatggggtttttgttaaggacaatgggtcgttgtttttggtgtatgatgatttgaagattgtgcctagttctttggtgagttccatg 5999055  T
Q  217 cagatgttgatggaattggggtattctgatttgagtcaattagaggaagttactcacaacattggaaaacaggaggtactggtgttgtgttttacaatgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5999054 cagatgttgatggaattggggtattctgatttgagtcaattagaggaagttactcacaacattggaaaacaggaggtactggtgttgtgttttacaatgt 5998955  T
Q  317 gtatttttatgtcatgttactctgttgcaccgacacttatgattgaaggtgtgtccacgtgtccgacacgtgacgtgtctgacatgacacttatgattgc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  5998954 gtatttttatgtcatgttactctgttgcaccgacacttatgattgaaggtgtgtccaggtgtccgacacgtgatgtgtctgacatgacacttatgattgc 5998855  T
Q  417 attgaattatgttatattctt 437  Q
    ||||||||||||||| |||||    
T  5998854 attgaattatgttattttctt 5998834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 5629881 - 5630158
Alignment:
Q  17 agtttacaacttttcagaatcttgattgtacttgtggaaaacccactaataaacagcctaataatttggattctgagggactggggaatagtggtggtat 116  Q
    ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| | || |||||              
T  5629881 agtttacaactttacagaatcttgattgtacttgtgaaaaaccaactaataaacagcctaagaatttggattctgagggtcaggagaata---------- 5629970  T
Q  117 tgctgatgctttaaatggggtttttgttaaggacaatgggtcgttgtttttggtgtatgatgatttgaagattgtgcctagttctttggtgagttccatg 216  Q
         ||||   ||||||||| ||||||||||| |||||||| ||||| ||||||| |||||||||||||||| ||||| |||||||| |||  ||  ||    
T  5629971 -----atgcacaaaatggggtctttgttaaggaaaatgggtcattgttcttggtgtttgatgatttgaagattatgccttgttctttgatgacctctgtg 5630065  T
Q  217 cagatgttgatggaattggggtattctgatttgagtcaattagaggaagttactcacaacattggaaaacaggaggtactggtgttgtgtttt 309  Q
     |   ||||| |||||| |||||||| ||||||||| | ||||||||||| || || ||||||||||| || |||||| | ||||||||||||    
T  5630066 gaacggttgaaggaattagggtattcagatttgagtaatttagaggaagtcacacataacattggaaagcaagaggtaattgtgttgtgtttt 5630158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 5437266 - 5436993
Alignment:
Q  18 gtttacaacttttcagaatcttgattgtacttgtggaaaacccactaataaacagcctaataatttggattctgagggactggggaatagtggtggtatt 117  Q
    |||||| ||||| || || ||| ||||||| ||||||||||| ||||||| ||||||||| ||| ||||||| ||||| |  |||||||||  | || |     
T  5437266 gtttactactttccaaaaccttcattgtacctgtggaaaacctactaatagacagcctaagaatctggattcagagggtcatgggaatagtactagtgtg 5437167  T
Q  118 gctgatgctttaaatggggtttttgttaaggacaatgggtcgttgtttttggtgtatgatgatttgaagattgtgcctagttctttggtgagttccatgc 217  Q
    |   || || |||||||||| |||||||  || ||||| ||  ||||| |||||| ||||||||| ||||||||||| |||||||  ||||  | | |||    
T  5437166 g---atactataaatggggtctttgttagagaaaatggatcaatgtttctggtgtctgatgatttaaagattgtgccaagttcttctgtgacatacttgc 5437070  T
Q  218 agatgttgatggaattggggtattctgatttgagtcaattagaggaagttactcacaacattggaaaacaggaggta 294  Q
    || |||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||| ||||| ||||||    
T  5437069 agctgttgatggaattggggtattcagatttgactcaattagaggaagtcacacacaacattggcaaacaagaggta 5436993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 302
Target Start/End: Complemental strand, 5458499 - 5458326
Alignment:
Q  129 aaatggggtttttgttaaggacaatgggtcgttgtttttggtgtatgatgatttgaagattgtgcctagttctttggtgagttccatgcagatgttgatg 228  Q
    ||||||||| ||||| || || ||||| || |||||| ||||||  |||||||| ||||||||||| ||||| |  |||| |||||||||| | ||||||    
T  5458499 aaatggggtctttgtaaaagaaaatggatcattgtttctggtgtccgatgatttaaagattgtgccaagttcctctgtgacttccatgcagctattgatg 5458400  T
Q  229 gaattggggtattctgatttgagtcaattagaggaagttactcacaacattggaaaacaggaggtactggtgtt 302  Q
    |||||||| ||||| || |||| |||| |||||||||| || ||||||||||| |||||||||||| |||||||    
T  5458399 gaattgggttattcagacttgactcaaatagaggaagtcacacacaacattggcaaacaggaggtaatggtgtt 5458326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 5487457 - 5487531
Alignment:
Q  18 gtttacaacttttcagaatcttgattgtacttgtggaaaacccactaataaacagcctaataatttggattctga 92  Q
    |||||| ||||| || || ||| ||||||| ||||||||||||| ||||||||||||||| |||||||| |||||    
T  5487457 gtttactactttccaaaaccttcattgtacctgtggaaaacccattaataaacagcctaagaatttggactctga 5487531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 37496834 - 37496775
Alignment:
Q  336 ctctgttgcaccgacacttatgattgaaggtgtgtccacgtgtccgacacgtgacgtgtc 395  Q
    ||||||||||| |||||||||||||||||| ||||||  |||||||||| ||| ||||||    
T  37496834 ctctgttgcacggacacttatgattgaaggcgtgtcccggtgtccgacatgtgtcgtgtc 37496775  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 39619045 - 39619092
Alignment:
Q  339 tgttgcaccgacacttatgattgaaggtgtgtccacgtgtccgacacg 386  Q
    |||||||| ||||||| |||||||||||||||||  ||||||||||||    
T  39619045 tgttgcacggacacttctgattgaaggtgtgtcccggtgtccgacacg 39619092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 5447487 - 5447422
Alignment:
Q  25 acttttcagaatcttgattgtacttgtggaaaacccactaataaacagcctaataatttggattct 90  Q
    ||||||||||| |||||||| |||||||||||||| || || | ||| |||  |||||||||||||    
T  5447487 acttttcagaaccttgattgcacttgtggaaaaccaacaaacagacaacctcgtaatttggattct 5447422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 5508842 - 5508898
Alignment:
Q  169 gtgtatgatgatttgaagattgtgcctagttctttggtgagttccatgcagatgttg 225  Q
    |||| |||||||||||||||| |||| ||||| ||| |||  |||||||||||||||    
T  5508842 gtgtctgatgatttgaagattttgccaagttccttgctgaactccatgcagatgttg 5508898  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 428
Target Start/End: Original strand, 43585945 - 43586038
Alignment:
Q  336 ctctgttgcaccgacacttatgattgaaggtgtgtccacgtgtccgacacgtgacgtgtctgaca-tgacacttatgattgcattgaattatgt 428  Q
    |||||||||||  |||||| |||||||||||||||||| ||||| |||||||  |||||| ||||  ||||||| ||||| |||||||||||||    
T  43585945 ctctgttgcacgaacacttctgattgaaggtgtgtccatgtgtctgacacgtatcgtgtccgacaccgacacttgtgattacattgaattatgt 43586038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 34073922 - 34074011
Alignment:
Q  340 gttgcaccgacacttatgattgaaggtgtgtccacgtgtccgacacgtgacgtgtctgacat-gacacttatgattgcattgaattatgt 428  Q
    |||||||  |||||| |||||||||| |||||    ||| ||||||||||||||||||| || ||||||||||||| |||| ||||||||    
T  34073922 gttgcacaaacacttttgattgaaggcgtgtcatgatgtgcgacacgtgacgtgtctgatatcgacacttatgattacattaaattatgt 34074011  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 428
Target Start/End: Complemental strand, 25956563 - 25956471
Alignment:
Q  336 ctctgttgcaccgacacttatgattgaaggtgtgtccacgtgtccgacacgtgacgtgtctgacat-gacacttatgattgcattgaattatgt 428  Q
    |||| |||||| ||||||| |||||||||| |||||| ||||||||||| ||  |||||| ||||  ||||||| ||||| |||||||||||||    
T  25956563 ctctattgcacggacacttctgattgaaggcgtgtcc-cgtgtccgacatgtatcgtgtccgacaccgacacttgtgattacattgaattatgt 25956471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 371
Target Start/End: Original strand, 10702456 - 10702488
Alignment:
Q  339 tgttgcaccgacacttatgattgaaggtgtgtc 371  Q
    |||||||||||||||| ||||||||||||||||    
T  10702456 tgttgcaccgacacttctgattgaaggtgtgtc 10702488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Complemental strand, 28224903 - 28224863
Alignment:
Q  344 caccgacacttatgattgaaggtgtgtccacgtgtccgaca 384  Q
    ||||||||||||||||||||||||||||   ||||||||||    
T  28224903 caccgacacttatgattgaaggtgtgtctcagtgtccgaca 28224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 785384 - 785433
Alignment:
Q  336 ctctgttgcaccgacacttatgattgaaggtgtgtccacgtgtccgacac 385  Q
    ||||||||||| ||||||| |||||||||||||||||  |||||||||||    
T  785384 ctctgttgcacggacacttctgattgaaggtgtgtcctggtgtccgacac 785433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 26178602 - 26178538
Alignment:
Q  336 ctctgttgcaccgacacttatgattgaaggtgtgtccacgtgtccgacacgtgacgtgtctgaca 400  Q
    ||||| ||||| ||||||| ||||||||||| |||||   ||||||||||||| |||||| ||||    
T  26178602 ctctgatgcacggacacttctgattgaaggtatgtcccgatgtccgacacgtgtcgtgtccgaca 26178538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 436
Target Start/End: Complemental strand, 37077412 - 37077376
Alignment:
Q  400 atgacacttatgattgcattgaattatgttatattct 436  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  37077412 atgacacatatgattccattgaattatgttatattct 37077376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 18945968 - 18946000
Alignment:
Q  333 ttactctgttgcaccgacacttatgattgaagg 365  Q
    |||||||||||||||||||||| ||||||||||    
T  18945968 ttactctgttgcaccgacacttctgattgaagg 18946000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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