View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_10 (Length: 356)
Name: NF3335_low_10
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 32775364 - 32775703
Alignment:
| Q |
16 |
gcagagacatcagaaaccaatatttcacggcccaaatctcagccgcagatttttcttaaaaaccttggctcaaaa-ttgttttcctttctaacacttgtt |
114 |
Q |
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| T |
32775364 |
gcagagacatcagaaaccaatatgtcacggcccaaatctcagccgcagatttttcttaaa--ccttggctcaaaaattgttttcctttctaacacttgtt |
32775461 |
T |
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| Q |
115 |
gccnnnnnnncaacaggtagtttacatattggaccaagtcaaggctttggaagaagagttaattctaagaattaagcaacaagggctaaattataaacct |
214 |
Q |
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| T |
32775462 |
gccaaaaaaacaacaggtagtttacatattggaccaagtcaaggctttggaagaagagttaattctaagaattaagcaacaagggctaaattataaacct |
32775561 |
T |
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| Q |
215 |
caaattcttgtggtgagtctcatgcaaacatatcacctctttctacgtgcaacttagaacttagtaaaatcatgtgagcatactcttaactttgacaggt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32775562 |
caaattcttgtggtgagtctcatgcaaacatatcacctctttctacatgcaacttagaacttagtaaaatcatgtgagcatactcttaactttgacaggt |
32775661 |
T |
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| Q |
315 |
aacaaggttgatacctgatgctagaggaaccaagtgccacca |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
32775662 |
aacaaggttgatacctgatgctagaggaaccaagtgccacca |
32775703 |
T |
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