View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_11 (Length: 355)
Name: NF3335_low_11
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 32775877 - 32776216
Alignment:
| Q |
1 |
ttgcagttacgctgcaaacttttctcttacggtaaaaagcagatgcaatcgtagttgttgacagcagtttagaactatatgtgttgtaccttttccactc |
100 |
Q |
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| T |
32775877 |
ttgcagttacgctgcaaacttttctcttactgtaaaaagcggatgcaatcacagttgttgaccgcagtttagaactat--gttttgtaccttttccgctc |
32775974 |
T |
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| Q |
101 |
ttatgaactttccttcttaccaataccttggtggatattaataggatgcaacaaccaaaattttggacctaatggaagggaagccagatcttgttattgg |
200 |
Q |
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| T |
32775975 |
ttatgaactttccttcttaccaatgctttggttgatattaataggatgcaacaaccaaaattttagacctaatggaagggaagccagatcttgttattgg |
32776074 |
T |
|
| Q |
201 |
aaattacacagatggaaatttggtggcatcactaatggctagaaaacttgggataactcaggttactaaaacttactatacctttatttatttttccttt |
300 |
Q |
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| T |
32776075 |
aaattacacagatggaaatttggtggcatcactaatggctagaaaacttgggataactcaggttactaaaacttactatatctttatttatttttccttt |
32776174 |
T |
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| Q |
301 |
caatatttttgtgccagaaaggatgtgttacttgtcacatgt |
342 |
Q |
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| T |
32776175 |
caatatttttgtgccagaaaggatgtgttacttgtcacatgt |
32776216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 263
Target Start/End: Complemental strand, 29119416 - 29119294
Alignment:
| Q |
141 |
ataggatgcaacaaccaaaattttggacctaatggaagggaagccagatcttgttattggaaattacacagatggaaatttggtggcatcactaatggct |
240 |
Q |
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||||||||| ||||| || ||| | |||| |||||||| || |||||||| |||| ||||||||||| ||||| ||||||| || || || ||| || |
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| T |
29119416 |
ataggatgccacaactaagattctcaacctcatggaaggaaaaccagatctcattataggaaattacactgatgggaatttggcagcttctcttatgtct |
29119317 |
T |
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| Q |
241 |
agaaaacttgggataactcaggt |
263 |
Q |
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|| |||||| ||||||||||||| |
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| T |
29119316 |
agcaaacttaggataactcaggt |
29119294 |
T |
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