View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3335_low_12 (Length: 332)
Name: NF3335_low_12
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 31814230 - 31814545
Alignment:
| Q |
19 |
aaaccaaacttagaagatctctatgttatgattcaattgcttttaacttctcaacccacggtttaattattcaaaccggtagtttggttcga-ttttttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31814230 |
aaaccaaacttagaagatctctatgttatgattcaattgcttttaacttctcaacccacggtttaattattcaaaccggtagtttggttcgatttttttg |
31814329 |
T |
|
| Q |
118 |
actcaaacagaagcttgtgattgcacaaatttggatacatgtctggcaattttttccttcataa-------------caaatttttcttgttcttatttt |
204 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31814330 |
actcaaacagaaccttgtgattgcacaaatttggatacatgtctggcaattttttccttcataacaggtgttgaatccaaatttttcttgttcttatttt |
31814429 |
T |
|
| Q |
205 |
attcctataaattcattttcgcatttacatgctaatattatactcaacaattgtttaattatttgctaaagttaagtgtcactaatgcacttgatttctc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
31814430 |
attcctataaattcattttcgcatttacatgctaatattatactcaacaattgtttaattagttgctaaagataagtgtcactaatgcacttgatttatc |
31814529 |
T |
|
| Q |
305 |
attacatgctaatatt |
320 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31814530 |
attacatgctaatatt |
31814545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 24280143 - 24279945
Alignment:
| Q |
19 |
aaaccaaacttagaagatctctatgttatgattcaattgcttttaacttctcaacccacggtttaattattcaaaccggtagtttggttcgattttttga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24280143 |
aaaccaaacttagaagatctctatgttatgattcaattgcttttaacttctcaacccacggtttaattattcaaaccggtagtttggttcgattttttga |
24280044 |
T |
|
| Q |
119 |
ctcaaacagaagcttgtgattgcacaaatttggatacatgtctggcaattttttccttcataacaaatttttcttgttcttattttattcctataaatt |
217 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24280043 |
ctcaaacagaaccttgtaattacacaaatttggatacatgtctggcaattttttccttcataacaaatttttcttgttcttattttattcctataaatt |
24279945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 36930045 - 36930096
Alignment:
| Q |
19 |
aaaccaaacttagaagatctctatgttatgattcaattgcttttaacttctc |
70 |
Q |
| |
|
|||| |||||| ||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
36930045 |
aaactaaacttggaagatctctaggttatggttcaattgcttttaacttctc |
36930096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University