View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3335_low_13 (Length: 311)

Name: NF3335_low_13

Description: NF3335

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3335_low_13

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 163; E-Value: 5e-87

Query Start/End: Original strand, 17 - 204

Target Start/End: Original strand, 23873138 - 23873325

Alignment:

Q	17	atgaacaataaagttaccatttggagccagctaagaaacgtgtatgataataatattttgtggcattgtcatgaaatggtaagnnnnnnntgcacattct	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	23873138	atgaacaataaagttaccatttggagcaagctaagaaacgtgtatgataataatattttgtggcattgtcatgaaatggtaagaaaaaaatgcacattct	23873237	T

Q	117	atggaattggatttcagtgttatcaattgtcattttcaatattttcggtgaaagttcatttaacaagttaaaataacatttccctctc	204	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23873238	atggaattggatttcagtgttatcaattgtcattttcaatattttcggtgaaagttcatttaacaagttaaaataacatttccctctc	23873325	T

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Target: chr3; HSP #2

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 236 - 268

Target Start/End: Original strand, 23873343 - 23873375

Alignment:

Q	236	atgtgtcgatataaaatttcttatgtatataaa	268	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23873343	atgtgtcgatataaaatttcttatgtatataaa	23873375	T

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