View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_15 (Length: 295)
Name: NF3335_low_15
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_15 |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 24458453 - 24458183
Alignment:
| Q |
18 |
gtttctcccaacaaatctggacaatcaggccttttatacacagtaagaagcataaatttgttaggaaatttattttttgtgatatatgatttgacttcct |
117 |
Q |
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| T |
24458453 |
gtttctcccaacaaatctggacaatcaggccttttatacacagtaagaagcataaatttgttaggaaatttattttttgtgatatatgatttgacttcct |
24458354 |
T |
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| Q |
118 |
gtgcgatgaagtcttacaatttgaattcgcactgattggattacagagtgtataggcttgtgggaatctataccaaattgccaattctggaacagtcagt |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24458353 |
gtgcgatgaagtcttacaatttgaattcgcagtgattggattacagagtgtataggcttgtgggaatctataccaaattgccaattctggaacagtcagt |
24458254 |
T |
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| Q |
218 |
gggcagatgtaatagctcgtgttgttaaaaattaccacaatgtcgattgggaagggttgttgcctttgctt |
288 |
Q |
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| T |
24458253 |
gggcagatgtaatagctcgtgttgttaaaaattaccacaatgtcgattgggaagggttgttgcctttgctt |
24458183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 24476656 - 24476387
Alignment:
| Q |
18 |
gtttctcccaacaaatctggacaatcaggccttttatacacagtaagaagcataaatttgttaggaaatttattttttgtgatatatgatttgacttcct |
117 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |
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| T |
24476656 |
gtttctcccaacaaatctggataatcaggccttttatacacagtaagaagcataaatttgttaggaaatttatgttttgtgatatctgatatgacttcct |
24476557 |
T |
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| Q |
118 |
gtgcgatgaagtcttacaatttgaattcgcactgattggattacagagtgtataggcttgtgggaatctataccaaattgccaattctggaacagtcagt |
217 |
Q |
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| T |
24476556 |
gtgcgatgaagtcttataatt-gaattcgcagtgattggattacggagtgtatagacttgtgggaatctataccaaattgccaattctggaacagtcagt |
24476458 |
T |
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| Q |
218 |
gggcagatgtaatagctcgtgttgttaaaaattaccacaatgtcgattgggaagggttgttgcctttgctt |
288 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
24476457 |
gggcagatgtcatagctcgtgttgtaaaaaattaccacaatgttgattgggaggggttgttgcctttgctt |
24476387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 17218063 - 17217999
Alignment:
| Q |
30 |
aaatctggacaatcaggccttttatacacagtaagaagcataaatttgttaggaaatttattttt |
94 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17218063 |
aaatttggacaatcaggccttttatacatagtaagaagcataaatttgttaggaaatttattttt |
17217999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 7240 - 7299
Alignment:
| Q |
35 |
tggacaatcaggccttttatacacagtaagaagcataaatttgttaggaaatttattttt |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7240 |
tggacaatcaggccttttatacacagtaagaagcataaacttgttaggaaatttattttt |
7299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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