View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3335_low_18 (Length: 284)

Name: NF3335_low_18
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3335_low_18
NF3335_low_18
[»] chr6 (3 HSPs)
chr6 (17-273)||(30013723-30013979)
chr6 (109-204)||(8029520-8029615)
chr6 (138-199)||(8920493-8920554)
[»] chr2 (3 HSPs)
chr2 (100-166)||(20218618-20218684)
chr2 (141-193)||(9002465-9002517)
chr2 (106-166)||(45472418-45472478)
[»] chr1 (3 HSPs)
chr1 (140-182)||(48377836-48377878)
chr1 (138-193)||(3298792-3298847)
chr1 (106-166)||(47446703-47446763)
[»] scaffold0531 (1 HSPs)
scaffold0531 (109-204)||(6888-6983)
[»] chr5 (2 HSPs)
chr5 (138-193)||(5004004-5004059)
chr5 (147-191)||(4290394-4290438)
[»] chr8 (2 HSPs)
chr8 (140-216)||(32402473-32402547)
chr8 (109-193)||(27789328-27789412)
[»] chr4 (1 HSPs)
chr4 (140-193)||(20114108-20114161)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 30013979 - 30013723
Alignment:
Q  17 caaaagacttattatttcttcttcctttgctccaacatttatctctctcatcccgaatgatagtgatgttgttaattacttcttcctgacactattataa 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30013979 caaaagacttattatttcttcttcctttgctccaacatttttctctctcatcccgaatgatagtgatgttgttaattacttcttcctgaaactattataa 30013880  T
Q  117 gtaagaaataacttgttaaaatcattgaataattgatgtatatagtctatgttataaatcaaatacataaattattcgataaaattaaaaggttaatttt 216  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30013879 gcaagaaacaacttgttaaaatcattgaataattgatgtatatagtctatgttataaatcaaatacataaattattcgataaaattaaaaggttaatttt 30013780  T
Q  217 gtttataataatgatcggatggggtatatcgcaagtataatgatgtgagaggatcat 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30013779 gtttataataatgatcggatggggtatatcgcaagtataatgatgtgagaggatcat 30013723  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 8029520 - 8029615
Alignment:
Q  109 tattataagtaagaaataacttgttaaaatcattgaataattgatgtatatagtctatgttataaatcaaatacataaattattcgataaaattaa 204  Q
    ||||||||| || |||| || | ||||| ||||||||||| |||||||| ||| |||| |  || ||||||||||| |||||||| ||||| ||||    
T  8029520 tattataagaaacaaatcacattttaaattcattgaataaatgatgtatttagactatatattagatcaaatacatgaattattcaataaacttaa 8029615  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 8920493 - 8920554
Alignment:
Q  138 tcattgaataattgatgtatatagtctatgttataaatcaaatacataaattattcgataaa 199  Q
    ||||||||||| |||||||  | | |||| ||||||||||||||||| |||||||| |||||    
T  8920493 tcattgaataactgatgtaccttgactatattataaatcaaatacatcaattattcaataaa 8920554  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 20218684 - 20218618
Alignment:
Q  100 tcctgacactattataagtaagaaataacttgttaaaatcattgaataattgatgtatatagtctat 166  Q
    ||||| |||||||||||| ||||||| |||| ||| | ||||||||||||||||||||  |||||||    
T  20218684 tcctgtcactattataagcaagaaatcactttttagattcattgaataattgatgtatccagtctat 20218618  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 9002517 - 9002465
Alignment:
Q  141 ttgaataattgatgtatatagtctatgttataaatcaaatacataaattattc 193  Q
    ||||||||||||| ||| | |||||| ||||| ||||||||||||| ||||||    
T  9002517 ttgaataattgatatatttggtctatattatatatcaaatacataagttattc 9002465  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 45472418 - 45472478
Alignment:
Q  106 cactattataagtaagaaataacttgttaaaatcattgaataattgatgtatatagtctat 166  Q
    ||||||||||||||| || | |||| ||||| ||||| ||||| |||||||| ||||||||    
T  45472418 cactattataagtaaaaatttactttttaaattcattcaataaatgatgtatgtagtctat 45472478  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 48377836 - 48377878
Alignment:
Q  140 attgaataattgatgtatatagtctatgttataaatcaaatac 182  Q
    |||||||||||||||||| |||||||| |||||||||||||||    
T  48377836 attgaataattgatgtatttagtctatattataaatcaaatac 48377878  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 3298792 - 3298847
Alignment:
Q  138 tcattgaataattgatgtatatagtctatgttataaatcaaatacataaattattc 193  Q
    ||||||||||||||||||||||||  ||| |||||||| | |||||| ||||||||    
T  3298792 tcattgaataattgatgtatatagattatattataaattatatacatcaattattc 3298847  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 47446763 - 47446703
Alignment:
Q  106 cactattataagtaagaaataacttgttaaaatcattgaataattgatgtatatagtctat 166  Q
    ||||||||||||||| || | |||| ||||| ||||| ||||| |||||||| ||||||||    
T  47446763 cactattataagtaaaaactcactttttaaattcattcaataaatgatgtatgtagtctat 47446703  T

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Target: scaffold0531 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 6983 - 6888
Alignment:
Q  109 tattataagtaagaaataacttgttaaaatcattgaataattgatgtatatagtctatgttataaatcaaatacataaattattcgataaaattaa 204  Q
    ||||||||| || |||| || | ||||| ||||||||||| |||||||| ||| |||| |  || ||||||||||| |||||||| ||||| ||||    
T  6983 tattataagcaacaaatcacattttaaattcattgaataaatgatgtatttagactatatattagatcaaatacatgaattattcaataaacttaa 6888  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 5004004 - 5004059
Alignment:
Q  138 tcattgaataattgatgtatatagtctatgttataaatcaaatacataaattattc 193  Q
    ||||||||||| |||||||| |||||||| |||||||| | |||||| ||||||||    
T  5004004 tcattgaataactgatgtatttagtctatattataaattagatacattaattattc 5004059  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 4290394 - 4290438
Alignment:
Q  147 aattgatgtatatagtctatgttataaatcaaatacataaattat 191  Q
    ||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  4290394 aattgatgtatctagtctatattatatatcaaatacataagttat 4290438  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 32402473 - 32402547
Alignment:
Q  140 attgaataattgatgtatatagtctatgttataaatcaaatacataaattattcgataaaattaaaaggttaatttt 216  Q
    ||||||| |||||||||| ||||||||   ||| ||||||||||| |||||||  |||||||||||| || ||||||    
T  32402473 attgaatgattgatgtatctagtctata--atagatcaaatacatcaattatttaataaaattaaaatgtgaatttt 32402547  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 27789412 - 27789328
Alignment:
Q  109 tattataagtaagaaataacttgttaaaatcattgaataattgatgtatatagtctatgttataaatcaaatacataaattattc 193  Q
    ||||||||  || ||||||||||||| | ||||||||||| |||||||| | ||| || ||||| | || |||||| ||||||||    
T  27789412 tattataaacaaaaaataacttgttacattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattc 27789328  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 20114161 - 20114108
Alignment:
Q  140 attgaataattgatgtatatagtctatgttataaatcaaatacataaattattc 193  Q
    ||||||||| | |||||||| |||||| || |||| ||||||||||||||||||    
T  20114161 attgaataactaatgtatatggtctatattctaaaccaaatacataaattattc 20114108  T

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