View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_2 (Length: 467)
Name: NF3335_low_2
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 96 - 453
Target Start/End: Complemental strand, 38231141 - 38230784
Alignment:
| Q |
96 |
aatgtaatgaatgatcattctttttctttggttaaatgaattaatgaacatttcttgcttcaaagaaaaaattaatgaacacttttagcattgaatgttt |
195 |
Q |
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| T |
38231141 |
aatgtaatgagtgatcattctttttctttggttaaatgaattaatgaacatttcttgcttcaaagaaaaaattaatgaacatttttagcattgaatgttt |
38231042 |
T |
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| Q |
196 |
tttcaaccgtgtattatttgcacaattgcatagattaatctctctagaaggataagattataattgatggcaaaattctttctcaagagatttaacattg |
295 |
Q |
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| T |
38231041 |
tttcaaccgtgtattatttgcacaattgcatagattaatctctctagatggataagactataattgatggcaaaattctttctcaagagatttaacattg |
38230942 |
T |
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| Q |
296 |
ttgcattctcatgactcaattccaagacctatggttaaattgaaagagactttttactttctcatccaagtgatctattagttgtcttcattccccacca |
395 |
Q |
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| T |
38230941 |
ttatattctcatgactcaattccaagacctatggttaaattgaaagagattttttactttctcatccaaatgatctattagttgtcttcattccccacca |
38230842 |
T |
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| Q |
396 |
catgaagtttttcctccacagcgttgcatatccccattgtccacgaggatcaaccatc |
453 |
Q |
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| T |
38230841 |
catgaagtttttcctccacagcgttgcatatccccattgtccacgaggatctaccatc |
38230784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 38231653 - 38231555
Alignment:
| Q |
14 |
cataggtaaataaaaaatttctcagtacctaaaaatcgaatgaatgaacattagaacatggtaaataattatatataaatgtaatgtaatgaatgatca |
112 |
Q |
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| T |
38231653 |
cataggtaaataaaaaatttctcagtacctaaaaatcgaatgaatgaacattagaacatggtaaataattatatataaatgtaatgtaatgaatgatca |
38231555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 43346361 - 43346411
Alignment:
| Q |
266 |
caaaattctttctcaagagatttaacattgttgcattctcatgactcaatt |
316 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
43346361 |
caaaactcttcctcaagagatttaacattgttgcattctcatgactaaatt |
43346411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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