View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_20 (Length: 250)
Name: NF3335_low_20
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 45874189 - 45874432
Alignment:
| Q |
1 |
caaaaggaggaggaaatatacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaa |
100 |
Q |
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| T |
45874189 |
caaaaggaggaggaaatttacctggccagtatttccattgataaacacattgctgcaattgagatctctatgaatgatacatggatcatgaacatgcaaa |
45874288 |
T |
|
| Q |
101 |
taattcaacccttccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45874289 |
taattcaacccttccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtac |
45874388 |
T |
|
| Q |
201 |
aaacttcagtgatgaaattaagtatgttatgatcttcatctctc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45874389 |
aaacttcagtgatgaaattaagtatgttatgatcttcatctctc |
45874432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 22263633 - 22263850
Alignment:
| Q |
14 |
aaatatacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaaccctt |
113 |
Q |
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|||| ||||||||||||||||||||||| ||||||||| ||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
22263633 |
aaatttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaaccctt |
22263732 |
T |
|
| Q |
114 |
ccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgat |
213 |
Q |
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| T |
22263733 |
ccaatatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgat |
22263832 |
T |
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| Q |
214 |
gaaattaagtatgttatg |
231 |
Q |
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|||||| ||| ||||||| |
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| T |
22263833 |
gaaattcagtgtgttatg |
22263850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 22270207 - 22269990
Alignment:
| Q |
14 |
aaatatacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaaccctt |
113 |
Q |
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|||| ||||||||||||||||||||||| ||||||||| ||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
22270207 |
aaatttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaaccctt |
22270108 |
T |
|
| Q |
114 |
ccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgat |
213 |
Q |
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|||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||| |
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| T |
22270107 |
ccaatatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgat |
22270008 |
T |
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| Q |
214 |
gaaattaagtatgttatg |
231 |
Q |
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|||||| ||| ||||||| |
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| T |
22270007 |
gaaattcagtgtgttatg |
22269990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 10082840 - 10083061
Alignment:
| Q |
19 |
tacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaacccttccaaa |
118 |
Q |
| |
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|||||| || || ||||| |||| ||| ||||| ||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
10082840 |
tacctgaccggtgtttccgttgacaaaaacattactgcaattgaggtctctatgaatgatacaaggatcatgcacatgcaaataattcaaccctttcaaa |
10082939 |
T |
|
| Q |
119 |
atttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgatgaaat |
218 |
Q |
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| T |
10082940 |
atctgcttagaccacttcttcaaagcttgaagagaaacatgcttatgtttcttcctatattccctcaaattcccacttgtacaaacctcagtgatgaaat |
10083039 |
T |
|
| Q |
219 |
taagtatgttatgatcttcatc |
240 |
Q |
| |
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| ||| | |||||||| ||||| |
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| T |
10083040 |
tcagtgtattatgatcatcatc |
10083061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 41245605 - 41245808
Alignment:
| Q |
19 |
tacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaacccttccaaa |
118 |
Q |
| |
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|||||||||| ||| ||||| | ||||||||| |||||||||||||| ||||||||||| | || |||||| ||||||||||||||||||| || | |
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| T |
41245605 |
tacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcaga |
41245704 |
T |
|
| Q |
119 |
atttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgatgaaat |
218 |
Q |
| |
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|| ||| | ||||| |||||||| ||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| || |||||||||| |
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| T |
41245705 |
atctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaat |
41245804 |
T |
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| Q |
219 |
taag |
222 |
Q |
| |
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|||| |
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|
| T |
41245805 |
taag |
41245808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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