View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_21 (Length: 249)
Name: NF3335_low_21
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 1240394 - 1240156
Alignment:
| Q |
5 |
gcccctccatcccgccctcagggccaccctacattacaaacatatactctaaaccatgtaatgtgttatggtgcaggtatggcctaaggcaacttctatt |
104 |
Q |
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| T |
1240394 |
gcccctccatcccgccctcagggccaccctacgttacaaacatatactctaaaccatgtaatgtgttatggtgcaggtatggcctaaggcaacttctatt |
1240295 |
T |
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| Q |
105 |
cttagatgcactgcaagatgacactacatatgttcgtcgtggctacgcccgcgagctagagaaagcattcagatacttagcatacataatcctaccttct |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1240294 |
cttagatgcactgcaagatgacactacatatgttcgtcgcggctacgcccgcgagctagagaaagcattcagatacttagcatacataatcctaccttct |
1240195 |
T |
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| Q |
205 |
ttctttgtagaacttgctcacaaaatcatattcatctca |
243 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
1240194 |
ttctttgtagaacttgctcacaaaatcatattcttctca |
1240156 |
T |
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