View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_22 (Length: 245)
Name: NF3335_low_22
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 50982158 - 50982371
Alignment:
| Q |
1 |
atgttattgaagaaagtaactacctagctataaactttacgactagctttgttgttgacaagaccttggattggaagcaaaaatgaaaaatataaccacc |
100 |
Q |
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| T |
50982158 |
atgttattgaagaaagtaactacctagctataaactttacgactacctttgttgttgacaagaccttggattggaagcaaaaatgaaaaatataaccacc |
50982257 |
T |
|
| Q |
101 |
catttat-gggagaacagaacaccaatgtctgtctttttgtttagtcttttttctagagtctctactacagcaaataaacccttcagttttgcctgtcaa |
199 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50982258 |
catttatggggagaacagaacaccaatgtctgtctttttgtttagtcttttttctagagtctctactacagcaaataaacccttcagttttgcctgacaa |
50982357 |
T |
|
| Q |
200 |
attacttaattaat |
213 |
Q |
| |
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|||||||||||||| |
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| T |
50982358 |
attacttaattaat |
50982371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 51085292 - 51085505
Alignment:
| Q |
1 |
atgttattgaagaaagtaactacctagctataaactttacgactagctttgttgttgacaagaccttggattggaagcaaaaatgaaaaatataaccacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51085292 |
atgttattgaagaaagtaactacctagctataaactttacgactacctttgttgttgacaagaccttggattggaagcaaaaatgaaaaatataaccacc |
51085391 |
T |
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| Q |
101 |
catttat-gggagaacagaacaccaatgtctgtctttttgtttagtcttttttctagagtctctactacagcaaataaacccttcagttttgcctgtcaa |
199 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51085392 |
catttatggggagaacagaacaccaatgtctgtctttttgtttagtcttttttctagagtctctactacagcaaataaacccttcagttttgcctgacaa |
51085491 |
T |
|
| Q |
200 |
attacttaattaat |
213 |
Q |
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|||||||||||||| |
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| T |
51085492 |
attacttaattaat |
51085505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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