View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_23 (Length: 244)
Name: NF3335_low_23
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 50981838 - 50981722
Alignment:
| Q |
1 |
tttggaggacgtaggttttcctagggctcgcatgatcaattagttaatttataaggaaaatcatctcgcgttttcacaaattgtatgcacccatctcctt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50981838 |
tttggaggacgtaggttttcctagggttcgcatgatcaattagttaatttataaggaaaatcatctcgcgttttcacaaattgtatgcacccatctcctt |
50981739 |
T |
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| Q |
101 |
taatttcacttattttc |
117 |
Q |
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||||||||||||||||| |
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| T |
50981738 |
taatttcacttattttc |
50981722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 51084972 - 51084856
Alignment:
| Q |
1 |
tttggaggacgtaggttttcctagggctcgcatgatcaattagttaatttataaggaaaatcatctcgcgttttcacaaattgtatgcacccatctcctt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51084972 |
tttggaggacgtaggttttcctagggttcgcatgatcaattagttaatttataaggaaaatcatctcgcgttttcacaaattgtatgcacccatctcctt |
51084873 |
T |
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| Q |
101 |
taatttcacttattttc |
117 |
Q |
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||||||||||||||||| |
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| T |
51084872 |
taatttcacttattttc |
51084856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 50981655 - 50981602
Alignment:
| Q |
183 |
cccatctccttgatatatattggcacatctcttttcctttctggctttggccta |
236 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50981655 |
cccatctcctttatatatattggcacatctcttttcctttctggctttggccta |
50981602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 51084789 - 51084736
Alignment:
| Q |
183 |
cccatctccttgatatatattggcacatctcttttcctttctggctttggccta |
236 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51084789 |
cccatctcctttatatatattggcacatctcttttcctttctggctttggccta |
51084736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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