View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_25 (Length: 239)
Name: NF3335_low_25
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_25 |
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| [»] scaffold0251 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37789133 - 37789353
Alignment:
| Q |
1 |
ctattcttaatattaatgtgtaaattggttttcttctatctttgtaattcaatcctttaaactcgagagaattgttttcagggcttgaaaggtgtggtaa |
100 |
Q |
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| T |
37789133 |
ctattcttaatattaatgtgtaaattggttttcttctatctttgtaattcaaacctttaaactcgagagaattgttttcagggcttgaaaggtgtggtaa |
37789232 |
T |
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| Q |
101 |
gagttgtagactaaggtggatgaactatctaaggccagatgtcaaaagagggaactttaatcaacaagaggaagagcttatcatcaaacttcatgaaaaa |
200 |
Q |
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| T |
37789233 |
gagttgtagactaaggtggatgaactatctaaggccagatgtcaaaagagggaacttcaatcaacaagaggaagagcttatcatcaaacttcatgaaaaa |
37789332 |
T |
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| Q |
201 |
ctgggtaataggtatcaactt |
221 |
Q |
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| T |
37789333 |
ctgggtaataggtatcaactt |
37789353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 214
Target Start/End: Original strand, 37807866 - 37808008
Alignment:
| Q |
72 |
ttgttttcagggcttgaaaggtgtggtaagagttgtagactaaggtggatgaactatctaaggccagatgtcaaaagagggaactttaatcaacaagagg |
171 |
Q |
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| T |
37807866 |
ttgtttgcaggtcttgaaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtcatgaagaag |
37807965 |
T |
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| Q |
172 |
aagagcttatcatcaaacttcatgaaaaactgggtaataggta |
214 |
Q |
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| T |
37807966 |
aagagactatcatcaaacttcatgaaaaattgggtaataggta |
37808008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 9870 - 9949
Alignment:
| Q |
90 |
aggtgtggtaagagttgtagactaaggtggatgaactatctaaggccagatgtcaaaagagggaactttaatcaacaaga |
169 |
Q |
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| T |
9870 |
aggtgtgggaagagttgtagattgaggtggttgaattatctaaggcctaatatcaaaagaggaaactttactcaagaaga |
9949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 262109 - 262026
Alignment:
| Q |
76 |
tttcagggcttgaaaggtgtggtaagagttgtagactaaggtggatgaactatctaaggccagatgtcaaaagagggaacttta |
159 |
Q |
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| T |
262109 |
tttcaggtctttcaaggtgtgggaagagttgtagattgaggtggctgaattatctaaggcctaatatcagaagagggaacttta |
262026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 2590831 - 2590865
Alignment:
| Q |
75 |
ttttcagggcttgaaaggtgtggtaagagttgtag |
109 |
Q |
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| T |
2590831 |
ttttcagggcttcaaaggtgtggtaagagttgtag |
2590865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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