View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_3 (Length: 460)
Name: NF3335_low_3
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 32272060 - 32272486
Alignment:
| Q |
18 |
tccttcaccacggcttcaagacctggctcatagatcggtaggtggtcgctgttccaaccgttgattctcggcgctgaaatatcgaccacggttactgcaa |
117 |
Q |
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| T |
32272060 |
tccttcaccacggcttcaagacctggctcgtagatcggtaggtggtcgctgttccaaccgttgattctcggcgctgaaatatcgaccacggttactgcaa |
32272159 |
T |
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| Q |
118 |
tcttaggacacttcaaggcaatcacagccattgtgggaccaccaacatatccagctccaatgcaacaaattttcaccatttttgctttttcttaacttcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272160 |
tcttaggacacttcaaggcaatcacagccattgtgggaccaccaacatatccagctccaatgcaacaaattttcaccatttttgctttttcttaacttcc |
32272259 |
T |
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| Q |
218 |
ttcactgtgtgacatgaagatcaaaatcaaaataattcatacatataaacaatgtatattactttgaaatgcttattattggttaagaccaaaattgaat |
317 |
Q |
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| T |
32272260 |
ttcactgtgtgacatgaagatcaaaatcaaaataattcatacatataaacaatgtatattactttgaaatgcttattattggttaagaccaaaattgaat |
32272359 |
T |
|
| Q |
318 |
aatttaatgaacatgaaaataatataatttataaaagcgaaatgtttcttgacacggatctagacacagacacaacatgtttataaggtttgcgagtttt |
417 |
Q |
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| T |
32272360 |
aattt-atgaacatgaaaataatataatttataaaagcgaaatgtttcttgacacggatctagacacagacacaacatgtttataaggtttgcaagtttt |
32272458 |
T |
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| Q |
418 |
aaattatattatctttatcatccgatgt |
445 |
Q |
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| T |
32272459 |
aaattatattatctttctcatccgatgt |
32272486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 45416267 - 45416311
Alignment:
| Q |
134 |
ggcaatcacagccattgtgggaccaccaacatatccagctccaat |
178 |
Q |
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| T |
45416267 |
ggcaataacagccattgttggaccccctacatatccagctccaat |
45416311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 19327231 - 19327411
Alignment:
| Q |
20 |
cttcaccacggcttcaagacctggctcatagatcggtaggtggtcgctgttccaaccgttgattctcggcgctgaaatatcgaccacggttactgcaatc |
119 |
Q |
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| T |
19327231 |
cttcaccacatcatcaagaccaggctcatatataggcaagtggtcactgttccaagcattgattcgaggcgtggcgatatcaacaacagctacctcaatc |
19327330 |
T |
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| Q |
120 |
ttaggacacttcaaggcaatcacagccattgtgggaccaccaacatatccagctccaatgcaacaaattttcaccattttt |
200 |
Q |
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| T |
19327331 |
tcaggacacttcaaagcaatcacagccattgttggaccaccaacatagccagctccaatgcaacaaatcttcaccattttt |
19327411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 3665213 - 3665277
Alignment:
| Q |
135 |
gcaatcacagccattgtgggaccaccaacatatccagctccaatgcaacaaattttcaccatttt |
199 |
Q |
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||||| || |||||||| |||||||| |||||||| || |||||||| ||||| ||||||||||| |
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| T |
3665213 |
gcaatgactgccattgttggaccaccgacatatccggcaccaatgcagcaaatcttcaccatttt |
3665277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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