View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3335_low_30 (Length: 226)

Name: NF3335_low_30
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3335_low_30
NF3335_low_30
[»] chr1 (21 HSPs)
chr1 (24-201)||(1240466-1240646)
chr1 (44-191)||(49762375-49762520)
chr1 (23-167)||(35405374-35405516)
chr1 (1-188)||(23897827-23898020)
chr1 (24-191)||(33735669-33735840)
chr1 (24-199)||(15102967-15103137)
chr1 (48-189)||(22667123-22667261)
chr1 (25-192)||(1153648-1153813)
chr1 (48-194)||(29062287-29062432)
chr1 (24-167)||(8246665-8246810)
chr1 (71-166)||(35383763-35383857)
chr1 (23-104)||(23935220-23935299)
chr1 (24-146)||(3265435-3265555)
chr1 (44-119)||(38742453-38742527)
chr1 (33-162)||(35204171-35204299)
chr1 (73-133)||(45385216-45385276)
chr1 (29-122)||(4626523-4626616)
chr1 (33-123)||(10976110-10976199)
chr1 (31-73)||(34258839-34258881)
chr1 (44-114)||(45012809-45012878)
chr1 (50-127)||(34298940-34299015)
[»] chr8 (25 HSPs)
chr8 (23-180)||(13236220-13236376)
chr8 (24-188)||(13580286-13580448)
chr8 (24-158)||(43872546-43872679)
chr8 (24-154)||(26835561-26835684)
chr8 (27-193)||(4350587-4350755)
chr8 (1-169)||(9191204-9191374)
chr8 (24-200)||(22486508-22486685)
chr8 (44-161)||(31277947-31278064)
chr8 (28-133)||(35480984-35481089)
chr8 (86-203)||(34142152-34142267)
chr8 (24-111)||(22930360-22930446)
chr8 (24-73)||(34142063-34142112)
chr8 (44-191)||(21347430-21347574)
chr8 (24-167)||(18987120-18987261)
chr8 (67-189)||(24606852-24606974)
chr8 (44-107)||(32349535-32349598)
chr8 (44-107)||(32366196-32366259)
chr8 (44-154)||(26801911-26802019)
chr8 (22-127)||(36042854-36042957)
chr8 (33-115)||(41849429-41849510)
chr8 (43-158)||(9052935-9053048)
chr8 (42-129)||(12181877-12181962)
chr8 (42-129)||(12426305-12426390)
chr8 (62-180)||(38075627-38075743)
chr8 (44-148)||(39295473-39295575)
[»] chr6 (24 HSPs)
chr6 (43-190)||(33344879-33345024)
chr6 (44-169)||(34329769-34329893)
chr6 (43-190)||(35121874-35122018)
chr6 (24-167)||(9815621-9815762)
chr6 (23-194)||(34573109-34573277)
chr6 (24-186)||(12174359-12174520)
chr6 (24-180)||(31787854-31788006)
chr6 (63-168)||(34969844-34969949)
chr6 (57-188)||(4337556-4337686)
chr6 (45-159)||(10668837-10668948)
chr6 (87-133)||(18991756-18991802)
chr6 (25-197)||(21954402-21954571)
chr6 (86-191)||(13229399-13229500)
chr6 (33-162)||(11274601-11274729)
chr6 (27-133)||(32331529-32331634)
chr6 (99-196)||(31236880-31236976)
chr6 (43-180)||(9524773-9524906)
chr6 (49-122)||(31153630-31153702)
chr6 (24-127)||(34540848-34540950)
chr6 (52-161)||(5608079-5608186)
chr6 (92-129)||(19638395-19638432)
chr6 (99-196)||(31246256-31246352)
chr6 (1-29)||(33344800-33344828)
chr6 (1-29)||(35122048-35122076)
[»] chr7 (23 HSPs)
chr7 (24-201)||(21828200-21828375)
chr7 (24-199)||(3351119-3351292)
chr7 (23-191)||(26448410-26448578)
chr7 (50-189)||(40351695-40351831)
chr7 (23-192)||(12177846-12178010)
chr7 (24-145)||(35812653-35812774)
chr7 (45-168)||(26914291-26914412)
chr7 (24-148)||(3940619-3940741)
chr7 (24-172)||(42335888-42336035)
chr7 (45-190)||(15133233-15133376)
chr7 (24-116)||(21129326-21129417)
chr7 (32-178)||(48008521-48008661)
chr7 (45-161)||(22318618-22318733)
chr7 (24-165)||(9429287-9429426)
chr7 (24-194)||(26912366-26912533)
chr7 (24-188)||(33480418-33480580)
chr7 (24-128)||(13431651-13431754)
chr7 (43-115)||(30095739-30095810)
chr7 (1-171)||(49164721-49164891)
chr7 (86-134)||(37996569-37996617)
chr7 (116-194)||(31799670-31799748)
chr7 (49-127)||(36066176-36066252)
chr7 (24-147)||(48393248-48393372)
[»] chr2 (26 HSPs)
chr2 (23-200)||(36186525-36186701)
chr2 (24-167)||(30257728-30257870)
chr2 (23-201)||(16547702-16547879)
chr2 (24-158)||(16646916-16647049)
chr2 (23-165)||(2886975-2887116)
chr2 (28-155)||(38561885-38562010)
chr2 (23-150)||(37912331-37912457)
chr2 (24-146)||(34345968-34346087)
chr2 (24-133)||(5163831-5163939)
chr2 (66-193)||(34909237-34909364)
chr2 (43-167)||(4206290-4206410)
chr2 (33-161)||(44157263-44157389)
chr2 (24-116)||(32415357-32415446)
chr2 (45-158)||(28556563-28556674)
chr2 (26-150)||(38134112-38134234)
chr2 (24-115)||(18829973-18830064)
chr2 (24-104)||(40876936-40877015)
chr2 (45-116)||(17271259-17271329)
chr2 (101-162)||(15925950-15926011)
chr2 (51-146)||(14952039-14952134)
chr2 (87-154)||(28149029-28149094)
chr2 (88-166)||(33819091-33819167)
chr2 (45-127)||(35280919-35280999)
chr2 (45-102)||(28148948-28149004)
chr2 (24-115)||(45443652-45443747)
chr2 (138-194)||(5164486-5164542)
[»] chr5 (17 HSPs)
chr5 (24-200)||(18626697-18626868)
chr5 (23-200)||(20870668-20870842)
chr5 (24-161)||(32257639-32257775)
chr5 (24-200)||(3193437-3193612)
chr5 (24-190)||(7886539-7886702)
chr5 (24-166)||(16570445-16570586)
chr5 (24-186)||(25034282-25034442)
chr5 (24-115)||(502843-502931)
chr5 (33-123)||(12263638-12263727)
chr5 (45-200)||(10325515-10325672)
chr5 (24-147)||(3596880-3597002)
chr5 (125-169)||(20017605-20017649)
chr5 (57-161)||(39542481-39542583)
chr5 (45-130)||(37147841-37147925)
chr5 (50-127)||(16569290-16569364)
chr5 (110-147)||(39790027-39790064)
chr5 (87-127)||(14499064-14499104)
[»] chr4 (29 HSPs)
chr4 (24-189)||(43515782-43515947)
chr4 (24-193)||(12320443-12320611)
chr4 (1-194)||(35372031-35372228)
chr4 (24-200)||(23870086-23870259)
chr4 (24-200)||(3643060-3643235)
chr4 (30-187)||(5627536-5627691)
chr4 (24-164)||(7102182-7102322)
chr4 (24-115)||(36071557-36071647)
chr4 (45-172)||(7853355-7853480)
chr4 (45-158)||(55147627-55147739)
chr4 (24-194)||(2113878-2114047)
chr4 (23-151)||(20811471-20811598)
chr4 (24-131)||(29118510-29118617)
chr4 (46-127)||(40807834-40807914)
chr4 (23-127)||(4596447-4596550)
chr4 (24-171)||(25779586-25779732)
chr4 (156-203)||(32554527-32554574)
chr4 (94-193)||(37226342-37226441)
chr4 (87-146)||(48653769-48653828)
chr4 (24-74)||(15986910-15986960)
chr4 (28-74)||(29369937-29369983)
chr4 (87-151)||(7745943-7746008)
chr4 (97-161)||(8733029-8733093)
chr4 (57-110)||(6137756-6137808)
chr4 (101-174)||(29628269-29628342)
chr4 (45-116)||(7540403-7540474)
chr4 (24-60)||(40807924-40807960)
chr4 (93-161)||(51002632-51002700)
chr4 (24-60)||(55147880-55147916)
[»] chr3 (17 HSPs)
chr3 (24-192)||(33510019-33510187)
chr3 (24-194)||(27538708-27538875)
chr3 (43-148)||(11365105-11365209)
chr3 (24-146)||(15670957-15671075)
chr3 (24-172)||(33682605-33682752)
chr3 (33-189)||(47000793-47000946)
chr3 (43-188)||(11383651-11383791)
chr3 (36-171)||(33290750-33290883)
chr3 (47-192)||(168610-168752)
chr3 (86-167)||(52704599-52704680)
chr3 (24-170)||(19149800-19149940)
chr3 (44-105)||(54417032-54417092)
chr3 (33-128)||(17713321-17713414)
chr3 (33-128)||(19014550-19014643)
chr3 (45-115)||(46744007-46744076)
chr3 (47-113)||(39838529-39838593)
chr3 (137-205)||(24252034-24252101)
[»] scaffold0527 (2 HSPs)
scaffold0527 (51-165)||(1711-1824)
scaffold0527 (51-165)||(9774-9887)
[»] scaffold1173 (1 HSPs)
scaffold1173 (44-180)||(387-521)
[»] scaffold0777 (1 HSPs)
scaffold0777 (24-194)||(5884-6053)
[»] scaffold0531 (1 HSPs)
scaffold0531 (24-199)||(9740-9915)
[»] scaffold0001 (1 HSPs)
scaffold0001 (33-71)||(65088-65126)
[»] scaffold0031 (1 HSPs)
scaffold0031 (33-127)||(47535-47628)
[»] scaffold0074 (1 HSPs)
scaffold0074 (137-170)||(46944-46977)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 1240466 - 1240646
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatatttt---ttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaa 120  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  1240466 atatatttctttttaatccgctttgattaattctattgaaaatatatttttttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaa 1240565  T
Q  121 gaagaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctgc 201  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1240566 gaagaaaaatatcaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctgc 1240646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 49762520 - 49762375
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatta 143  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | || || ||||||||||  |||||||||| |||||| |||||||    
T  49762520 ctttgattaattctattgaaaatatattttt-agagaactttgattataaatgagttttgtgtaacaaaaaatataagaagaaaa-tattagaataatta 49762423  T
Q  144 aaagggcacaattttattgtttcgtccaaggcaccaagaatcttagga 191  Q
    ||| | ||||||||||||||||||||||||||| ||| ||||||||||    
T  49762422 aaaagacacaattttattgtttcgtccaaggcatcaaaaatcttagga 49762375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 35405374 - 35405516
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||||||||||||  ||||||||||||| |||| |||| |||||||| ||| ||||| ||||| |||||||| ||||||||||||||||||||||    
T  35405374 tatatatttctttttaattcgctttgattaattatatttaaaaaatattttt-agataactttgattagaaatgaatattttgcaacaaaaaatgcaaga 35405472  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgtttcg 167  Q
    ||||||||||| | |||||||||||||| |||  |||||||||||    
T  35405473 agaaaaatatttgaataattaaaagggcgcaa-attattgtttcg 35405516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 23898020 - 23897827
Alignment:
Q  1 attattatttttacttagtagtta------tatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaa 94  Q
    ||||| ||||||||||||||||||      |||||| ||||||||| ||||||||||||||||||| |||| |||||||| ||| ||||| |||||||||    
T  23898020 attatcatttttacttagtagttagtaatatatattcctttttaatttgctttgattaattctatttaaaa-atattttt-agataactttgattataaa 23897923  T
Q  95 tgaatcttttgcaacaa--aaaatgcaagaagaaaaatattaggat-aattaaaagggcacaattttattgtttcgtccaaggcaccaagaatctta 188  Q
    ||||| |||||||||||  |||||||||||||||||||||| | || |||||||||||||||| |||||||||| | ||| |||| ||| |||||||    
T  23897922 tgaatattttgcaacaaaaaaaatgcaagaagaaaaatatttgaataaattaaaagggcacaa-tttattgttttgcccagggcaacaaaaatctta 23897827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 33735840 - 33735669
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgc-----aacaaaaaatgc 118  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||     || ||||||  |    
T  33735840 atatatttctttttaatttggtttgattaattatattgaaaatatat-ttttagacaactttgattataaatgaatcttttgccaaaaaaaaaaaaaaac 33735742  T
Q  119 aagaagaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttagga 191  Q
     ||||||||| |||||  |||||||||||||||||||||||||||||   ||||| |||||| ||| ||||||    
T  33735741 gagaagaaaactattaaaataattaaaagggcacaattttattgttttacccaagacaccaaaaattttagga 33735669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 15103137 - 15102967
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||||| | || |||||||||||||||||||   |||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  15103137 atatatttctttttactttgttttgattaattctattgaagtaatattttt-agagaactttgattataaatgaatcttgtgcaacaaaaaatacaagaa 15103039  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccct 199  Q
        ||||||   |||||||||||  |||||||||||||||||| | | |||||||| || |||||||||| ||||    
T  15103038 ----aatattgaaataattaaaagaacacaattttattgtttcgcctatggcaccaaaaaacttaggaccggccct 15102967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 22667261 - 22667123
Alignment:
Q  48 gattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaag 147  Q
    ||||||||||||||||||| |||||||  || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||    
T  22667261 gattaattctattgaaaatttatttttg-gataactttgattataaatgaatattttgcaataaaaaatgcaagaagaaaaatatttgaataattaaaag 22667163  T
Q  148 ggcacaattttattgtttcgtccaaggcaccaagaatcttag 189  Q
    || | || ||||||||||| |||| |||||||| ||||||||    
T  22667162 ggtataa-tttattgtttc-tccatggcaccaaaaatcttag 22667123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 1153813 - 1153648
Alignment:
Q  25 tatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaag 124  Q
    ||||||| ||||||| || |||| |||||||||||| ||||||| ||||  ||||||||| |||| | ||| ||||||||||||||||||| ||||||||    
T  1153813 tatatttgtttttaa-ctcctttaattaattctattaaaaatatgtttta-agagaactttgattttcaattaatcttttgcaacaaaaaacgcaagaag 1153716  T
Q  125 aaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggac 192  Q
    ||| ||||| |||||||||||| || |||| ||||||| ||||  || | |||||| |||||||||||    
T  1153715 aaagatattcggataattaaaacggtacaactttattgattcgcacaggacaccaaaaatcttaggac 1153648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 29062432 - 29062287
Alignment:
Q  48 gattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaag 147  Q
    ||||||||| ||| |||||||||| || |||||||||  ||||||||| |||||||||||||||||||| |||||||||| ||||| |  ||||||||||    
T  29062432 gattaattcaatttaaaatatattgtt-agagaacttttattataaataaatcttttgcaacaaaaaatacaagaagaaatatattggagtaattaaaag 29062334  T
Q  148 ggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccg 194  Q
     |||  |||||||||||||||  ||  |||||| ||||||| |||||    
T  29062333 agcattattttattgtttcgtttaaaacaccaaaaatcttaagaccg 29062287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 8246810 - 8246665
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatatt--ttttagagaacttcgattataaatgaatct--tttgcaacaaaaaatgca 119  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||  ||||| |||||||  |||||||||||||||  | |||||||||||||  |    
T  8246810 atatatttctttttaatttgatttgattaattctattgaaaatatattttttttatagaactttaattataaatgaatcttatatgcaacaaaaaatata 8246711  T
Q  120 agaagaaaaatattaggataattaaaagggcacaattttattgtttcg 167  Q
    |||  ||||||||| |  |||||| |||  |||||||||||| |||||    
T  8246710 aga--aaaaatattggagtaattagaagaacacaattttattatttcg 8246665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 35383857 - 35383763
Alignment:
Q  71 tttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttc 166  Q
    |||||||||||||| ||||||||||||| ||||||||||| |||||| ||| ||||| ||||||| |||||||||| | |||||||| ||||||||    
T  35383857 tttttagagaactttgattataaatgaaacttttgcaaca-aaaatgtaagtagaaatatattagaataattaaaatgacacaatttgattgtttc 35383763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 23935220 - 23935299
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatctttt 104  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||||||||||||| ||||    
T  23935220 tatatatttctttttaatctgctttgattaattctatttaaaa-ata-tttttagataactttgattataaatgaatatttt 23935299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 3265555 - 3265435
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||||||    ||||||| ||||||  ||||||||| ||||  |||||||||  ||||| ||||||||||||||||||||||||||| |||    
T  3265555 atatatttctttttaactccctttgat-aattcttatgaaaatatgtttta-agagaacttttattatcaatgaatcttttgcaacaaaaaatgcacgaa 3265458  T
Q  124 gaaaaatattaggataattaaaa 146  Q
    |||| | ||| | ||||||||||    
T  3265457 gaaagacattcgaataattaaaa 3265435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 38742453 - 38742527
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgca 119  Q
    |||||||||  ||||||||||||||||||| |||||||||| |||||| ||| |||||||| ||| ||||||||||    
T  38742453 ctttgattatatctattgaaaatatatttt-tagagaactttgattatgaattaatcttttacaaaaaaaaatgca 38742527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 162
Target Start/End: Complemental strand, 35204299 - 35204171
Alignment:
Q  33 tttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatat 132  Q
    |||||||  |||||||||||||| |||||| || |||||||| |||||| || |||||| ||||||| |||||||| ||||| | |||||| ||||| ||    
T  35204299 tttttaaattgctttgattaattatattgacaa-atattttt-agagaattttgattatgaatgaatattttgcaataaaaagtacaagaaaaaaaacat 35204202  T
Q  133 taggataatt-aaaagggcacaattttattg 162  Q
    | | |||||| |||||  |||||||||||||    
T  35204201 tggaataattaaaaagaacacaattttattg 35204171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 45385276 - 45385216
Alignment:
Q  73 tttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatatt 133  Q
    |||||||||| | |||| | |||||||||||||||||||||||| ||||| ||||||||||    
T  45385276 tttagagaaccttgattttcaatgaatcttttgcaacaaaaaatacaagaggaaaaatatt 45385216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 4626616 - 4626523
Alignment:
Q  29 tttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatga-atcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| | | | |||  ||||| ||||| ||||||||||| ||||||| |||||    
T  4626616 tttctttttaattctctttgattaattctattgaaaatatatttttaaaaaacctta-attatgaatgagatcttttgcaataaaaaatacaaga 4626523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 10976199 - 10976110
Alignment:
Q  33 tttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||| |||||| ||  ||| |||||||||||||| ||||| | ||||| |||||||||| |||||||| ||| |||||||| |||||    
T  10976199 tttttaatttgctttcatcgattatattgaaaatatat-ttttataaaactttgattataaataaatcttttacaataaaaaatgtaagaa 10976110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 34258839 - 34258881
Alignment:
Q  31 tctttttaatctgctttgattaattctattgaaaatatatttt 73  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||    
T  34258839 tctttttaacctgttttgattaattctattgaaaaaatatttt 34258881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 45012878 - 45012809
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaa 114  Q
    ||||||||||||||||||||||| |||||||  ||| |  | |||||| |||||||||||| |||||||||    
T  45012878 ctttgattaattctattgaaaatttatttttc-gagtatcttgattatgaatgaatcttttacaacaaaaa 45012809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 34299015 - 34298940
Alignment:
Q  50 ttaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaa 127  Q
    |||||||||||||| ||||| |||||| ||||||| |||||| ||| |||||||| || ||||||| | |||||||||    
T  34299015 ttaattctattgaacatata-tttttaaagaactt-gattatgaataaatcttttccagcaaaaaacgtaagaagaaa 34298940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 13236220 - 13236376
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||||||| |||||||||| ||||||||| |||| |||||||||||| |||||||||    
T  13236220 tatatatttctttttaattcgctttgattaattctaatgaaaatatatttt-tagagaactttgattataaacgaattttttgcaacaaataatgcaaga 13236318  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaa 180  Q
    ||||||||||| | |||||||||| |||| |||||||||||||| |||| ||||||||    
T  13236319 agaaaaatattggaataattaaaatggcataattttattgtttcatccagggcaccaa 13236376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 13580448 - 13580286
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||| | | ||||| | |||||||||||| ||||||||||||||||||||||     
T  13580448 atatatttctttttaattcgctttgattaattctattgaaaatatatttttaa-ataactttggttataaatgaatattttgcaacaaaaaatgcaagac 13580350  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatctta 188  Q
     ||||||||||| |||||||||||  || || |||||||||||||||| | |||||| |||||||    
T  13580349 aaaaaatattagaataattaaaagaacataa-tttattgtttcgtccaggacaccaaaaatctta 13580286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 43872546 - 43872679
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||| ||||| |||||| ||||||||||||| |||||||||||| | ||||||| ||||||||||||||||| ||||||||||||| ||| ||    
T  43872546 atatatttcttcttaatttgctttcattaattctattgtaaatatatttttaa-agaactttgattataaatgaatcttgtgcaacaaaaaatacaaaaa 43872644  T
Q  124 gaaaaatattaggataattaaaagggcacaatttt 158  Q
    |||||||||||| ||||||||||||| ||||||||    
T  43872645 gaaaaatattagaataattaaaagggtacaatttt 43872679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 26835684 - 26835561
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||      |    
T  26835684 atatatttctttttaattttcttttattaattctattgaaaatatat-ttttagagaactttgattataaatgaatcttgtgcaacaaaaaat------a 26835592  T
Q  124 gaaaaatattaggataattaaaagggcacaa 154  Q
     ||||||||||| ||||||||||||||||||    
T  26835591 caaaaatattagaataattaaaagggcacaa 26835561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 4350755 - 4350587
Alignment:
Q  27 tatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaat----gaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||| ||||||||  |||||| ||||||||||||||||||||||||| | | ||||| ||||||| ||    |||| |||| |||||||||||||||||    
T  4350755 tatttttttttaattcgctttggttaattctattgaaaatatattttt-atataactttgattatatataaacgaatatttttcaacaaaaaatgcaaga 4350657  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggacc 193  Q
    | ||||||||||  ||||||||||||| |||| |||||||||||||||| | ||| || |||| |||||||    
T  4350656 aaaaaaatattaaaataattaaaagggtacaa-tttattgtttcgtccaggacacgaaaaatcctaggacc 4350587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 9191204 - 9191374
Alignment:
Q  1 attattatttttacttagtagttatata------tttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaa 94  Q
    ||||||||||||||||||||||||||||      ||| ||||||||   ||||||||||||||||| ||||||||||||| ||||||||  |||||||||    
T  9191204 attattatttttacttagtagttatatagatatatttatttttaattcactttgattaattctattcaaaatatattttt-agagaactatgattataaa 9191302  T
Q  95 tgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttcgtc 169  Q
    |||||||||| ||||||| |||||||||   ||||||||   |||||||||| |  ||| ||||||| |||||||    
T  9191303 tgaatcttttacaacaaataatgcaaga---aaaatattgaaataattaaaaagagacatttttattatttcgtc 9191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 22486685 - 22486508
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||| |||||||||||| || ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||||||| ||||| |||||||  || ||    
T  22486685 atatgtttctttttaatttgttttgattaattctattgaaaatatcatttt-agagaactttgattataaatgaatcttgtgcaa-aaaaaataaaaaaa 22486588  T
Q  124 ga---aaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctg 200  Q
    ||   |||||||||| ||||||||||||| |||||||| ||  |||| |  |||||  || ||||||||||||| |||||    
T  22486587 gacaaaaaatattagaataattaaaagggtacaatttttttcgttcgcctcaggcataaaaaatcttaggaccgaccctg 22486508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 31277947 - 31278064
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatta 143  Q
    ||||||||||||||||||||||||| | ||||||||||| | |||||||||||||||||||||| | |||||| |||||||||| | ||| | ||||| |    
T  31277947 ctttgattaattctattgaaaatatttattttagagaaccttgattataaatgaatcttttgcacctaaaaattcaagaagaaagagattcgaataataa 31278046  T
Q  144 aaagggcacaattttatt 161  Q
    ||| ||||||| ||||||    
T  31278047 aaatggcacaactttatt 31278064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 35481089 - 35480984
Alignment:
Q  28 atttctttttaatctgctttgattaattctattgaaaat-atattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaa 126  Q
    ||||||| |||| | ||||| | |||||||||||||||| |||||||| ||||||| | |||||||||  |||||||||||||||||||| |||||||||    
T  35481089 atttcttattaacccgctttcaataattctattgaaaatgatattttt-agagaacattgattataaaaaaatcttttgcaacaaaaaatacaagaagaa 35480991  T
Q  127 aaatatt 133  Q
    |||||||    
T  35480990 aaatatt 35480984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 34142152 - 34142267
Alignment:
Q  86 gattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatc 185  Q
    |||||||||||||| |||  |||||||||||||| ||| ||||| ||||  ||||||||||||| ||||||| |||||||||||||  ||| ||| ||||    
T  34142152 gattataaatgaatatttatcaacaaaaaatgcacgaaaaaaaa-attaaaataattaaaagggtacaattt-attgtttcgtccagagcatcaaaaatc 34142249  T
Q  186 ttaggaccgtccctgcat 203  Q
    ||||||||| ||||||||    
T  34142250 ttaggaccggccctgcat 34142267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 22930360 - 22930446
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaa 111  Q
    |||||| ||||||||||  ||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||| |||| ||||||    
T  22930360 atatatatctttttaattcgctttgattaattctattgaaaaaata-tttttagataactttgattataaatgaatattttacaacaa 22930446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 34142063 - 34142112
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatatttt 73  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34142063 atatatttctttttaatccgctttgattaattctattgaaaatatatttt 34142112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 21347574 - 21347430
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatta 143  Q
    ||||||||||||||||||||||||||| ||||| | || || ||||||||||||||||| |||||  |||||| ||| || ||||||   |  |||||||    
T  21347574 ctttgattaattctattgaaaatatat-ttttaaataaatttgattataaatgaatcttgtgcaatcaaaaatacaaaaaaaaaaatcgaa--ataatta 21347478  T
Q  144 aaagggcacaattttattgtttcgtccaaggcaccaagaatcttagga 191  Q
    ||||  |||||||||||||||| | ||| || ||||| ||| ||||||    
T  21347477 aaagaccacaattttattgtttggcccatggtaccaaaaatgttagga 21347430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 18987261 - 18987120
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||| ||||    ||||||||||| |||||||| ||||||||| ||||||||| ||| || ||| ||||||||| || ||||  || |||||    
T  18987261 atatatttctttgtaattatgtttgattaattatattgaaattatattttt-agagaactttgataatgaattaatcttttgaaa-aaaatttgaaagaa 18987164  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcg 167  Q
     ||| ||||||| | | |||||||| ||||||||||||||||||    
T  18987163 taaatatattagaagatttaaaaggacacaattttattgtttcg 18987120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 24606852 - 24606974
Alignment:
Q  67 atattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttc 166  Q
    |||||||||| |||||||   |||||||||||||||||||| ||||||||| ||||||||| | |||   |||| ||||||| ||||| ||| ||| |||    
T  24606852 atattttttaaagaactttatttataaatgaatcttttgcagcaaaaaatgtaagaagaaagacatttaaataactaaaaggacacaactttgttgattc 24606951  T
Q  167 gtccaaggcaccaagaatcttag 189  Q
    | | ||| |||||| ||||||||    
T  24606952 gcctaagacaccaaaaatcttag 24606974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 32349535 - 32349598
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgca 107  Q
    ||||||||||||||||||||||||| | ||||||||||| | ||||||  ||||||||||||||    
T  32349535 ctttgattaattctattgaaaatatttcttttagagaacattgattatggatgaatcttttgca 32349598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 32366196 - 32366259
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgca 107  Q
    ||||||||||||||||||||||||| | ||||||||||| | ||||||  ||||||||||||||    
T  32366196 ctttgattaattctattgaaaatatttcttttagagaacattgattatggatgaatcttttgca 32366259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 26801911 - 26802019
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatta 143  Q
    |||||||||||| |||||||| |||||| || ||||||| | ||||||||| || || |||||||||||||||  || |||||||| |||   |||||||    
T  26801911 ctttgattaattatattgaaa-tatattatt-agagaacattgattataaacgagtcctttgcaacaaaaaatttaataagaaaaacattcaaataatta 26802008  T
Q  144 aaagggcacaa 154  Q
    |||||||||||    
T  26802009 aaagggcacaa 26802019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 36042957 - 36042854
Alignment:
Q  22 ttatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaag 121  Q
    |||||||| | || ||||| || ||||||||||| |||| ||||||||||||  | ||||| | |||||| ||| ||| |||||||||||||||| ||||    
T  36042957 ttatatatattttcttaatttgttttgattaattttatttaaaatatatttt--aaagaaccttgattatgaattaattttttgcaacaaaaaatacaag 36042860  T
Q  122 aagaaa 127  Q
    ||||||    
T  36042859 aagaaa 36042854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 41849429 - 41849510
Alignment:
Q  33 tttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaa 115  Q
    |||||||  ||| |||||||||||||||||||||||| |||||| ||||  | |||||| |||||||||||| ||||||||||    
T  41849429 tttttaacttgcattgattaattctattgaaaatata-tttttaaagaatcttgattattaatgaatctttttcaacaaaaaa 41849510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 9052935 - 9053048
Alignment:
Q  43 gctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatt 142  Q
    ||||| ||||||| |||||||||||||| ||| ||||||| | |||||| ||||| |||||| ||||||||||||  | |||||| | |||   ||||||    
T  9052935 gctttaattaatt-tattgaaaatatatattt-agagaaccttgattatgaatgattcttttacaacaaaaaatgtgaaaagaaatacatttaaataatt 9053032  T
Q  143 aaaagggcacaatttt 158  Q
    ||||||  ||||||||    
T  9053033 aaaaggaaacaatttt 9053048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 12181877 - 12181962
Alignment:
Q  42 tgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaa 129  Q
    |||||||| ||||| |||||| || ||||||| ||||||| || |||||| ||||||| |||||||||||||| | |||||| |||||    
T  12181877 tgctttgactaattatattgacaa-atatttt-tagagaattttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaa 12181962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 12426305 - 12426390
Alignment:
Q  42 tgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaa 129  Q
    |||||||| ||||| |||||| || ||||||| ||||||| || |||||| ||||||| |||||||||||||| | |||||| |||||    
T  12426305 tgctttgactaattatattgacaa-atatttt-tagagaattttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaa 12426390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 38075743 - 38075627
Alignment:
Q  62 aaaatatattttttagagaacttcgattataaatgaatcttttgcaac-aaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttat 160  Q
    ||||||||||||| |||  ||||||||||| ||||||| |||| |||| |||||||| | ||| |||||||||   |||||||||| || |||| |||||    
T  38075743 aaaatatattttt-agatgacttcgattatgaatgaatattttacaacaaaaaaatgaacgaa-aaaaatattgaaataattaaaatggtacaa-tttat 38075647  T
Q  161 tgtttcgtccaaggcaccaa 180  Q
    ||||||||| | ||||||||    
T  38075646 tgtttcgtcaagggcaccaa 38075627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 39295575 - 39295473
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatta 143  Q
    |||||||| ||||||||||||||| |||||| ||| ||| |  |||| ||||| || |||||||||||||| | || ||||||| | ||| | |||||||    
T  39295575 ctttgattgattctattgaaaatacattttt-agaaaacctt-attacaaatggattttttgcaacaaaaattacatgaagaaacacattcgaataatta 39295478  T
Q  144 aaagg 148  Q
    |||||    
T  39295477 aaagg 39295473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 43 - 190
Target Start/End: Original strand, 33344879 - 33345024
Alignment:
Q  43 gctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatt 142  Q
    |||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||||| | ||||||    
T  33344879 gctttgattaattctattgaaaatatattttt-agataactttgattataaatgaatattttgcaacaaaaaatgctagaagaaaaatatttgaataatt 33344977  T
Q  143 aaaagggcacaattttattgtttcgtccaaggcaccaagaatcttagg 190  Q
    ||||||||| || |||||||||||||||| |||||||| |||||||||    
T  33344978 aaaagggcataa-tttattgtttcgtccagggcaccaaaaatcttagg 33345024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 34329893 - 34329769
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatta 143  Q
    ||||||||||||||||||||||||||||||| ||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  34329893 ctttgattaattctattgaaaatatattttt-agagaactttgcttataaatagatcttttgcaacaaaaaatgcaagaagaaaaatattagaataatta 34329795  T
Q  144 aaagggcacaattttattgtttcgtc 169  Q
    ||||||||  ||||||||||||||||    
T  34329794 aaagggcatgattttattgtttcgtc 34329769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 35122018 - 35121874
Alignment:
Q  43 gctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatt 142  Q
    |||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||| ||||||| |||||||||||||| | ||||||    
T  35122018 gctttgattaattctattgaaaatatattttt-agataactttgattataaatgaatattttgcaaca-aaaatgctagaagaaaaatatttgaataatt 35121921  T
Q  143 aaaagggcacaattttattgtttcgtccaaggcaccaagaatcttagg 190  Q
    ||||||||| || |||||||||||||||| |||||||| |||||||||    
T  35121920 aaaagggcataa-tttattgtttcgtccagggcaccaaaaatcttagg 35121874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 9815762 - 9815621
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||||||||  ||||||||||| | |||||||||||||||||| ||| ||||  |||||||||||| | ||||| |||||||||||||||||    
T  9815762 atatatttctttttaattcgctttgattaactttattgaaaatatattttt-agaaaactatgattataaatgagt-ttttgtaacaaaaaatgcaagaa 9815665  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcg 167  Q
    ||| |||||||| |||||||||||||||||||||||||||||||    
T  9815664 gaataatattagaataattaaaagggcacaattttattgtttcg 9815621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 34573277 - 34573109
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||||||||||||  | ||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||  || ||| ||||||| |    
T  34573277 tatatatttctttttaattcggtttgattaattttattgaaaatatat-ttttaaagaactttgattataaatgaatctttt--aaaaaagaatgcaaaa 34573181  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccg 194  Q
    ||||||||||| | ||| || |||||||||||||||||||||| ||| | | || ||| ||||||| |||||    
T  34573180 agaaaaatatttgaatattttaaagggcacaattttattgttttgtctaggacatcaaaaatcttaagaccg 34573109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 12174359 - 12174520
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||||||||  | ||||||||||| |||| |||||||||||| ||||||||||  ||| ||||||||||||||| |||||||| ||||||||    
T  12174359 atatatttctttttaattcgttttgattaattatattaaaaatatatttt-tagagaactttaattgtaaatgaatcttttgtaacaaaaactgcaagaa 12174457  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatct 186  Q
    | ||||||||   |||| |||||   |||||||||||||||||||||| | |||||| |||||    
T  12174458 ggaaaatattgaaataaataaaacaacacaattttattgtttcgtccatgacaccaaaaatct 12174520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 31787854 - 31788006
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||| ||| |||| |||||  ||||||||||||| ||||||||| ||||||||||||     
T  31787854 atatatttatttttaattcgctttgattaattctattgaaaatata-tttgtagataactttaattataaatgaatattttgcaactaaaaatgcaaga- 31787951  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaa 180  Q
     |||||||||   |||||||||| || |||| |||||||||||||||| | ||||||    
T  31787952 -aaaaatattgaaataattaaaaaggtacaa-tttattgtttcgtccaggacaccaa 31788006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 34969844 - 34969949
Alignment:
Q  63 aaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattg 162  Q
    ||||||||||||||   ||||| || |||||||||||||||| |||||||||||||||||||||||||||| | ||| | |||||||||| ||||| |||    
T  34969844 aaatatattttttaagaaactttgactataaatgaatcttttacaacaaaaaatgcaagaagaaaaatattggaatagtgaaaagggcactattttgttg 34969943  T
Q  163 tttcgt 168  Q
    ||||||    
T  34969944 tttcgt 34969949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 4337686 - 4337556
Alignment:
Q  57 tattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaatt 156  Q
    |||||| ||| ||||||||| | ||||| |||||||||| |||||||| |||||||||||| |||||||||  |||||| |||||||||| |||||||||    
T  4337686 tattgagaatgtattttttaaa-aactttgattataaataaatcttttacaacaaaaaatgtaagaagaaagctattagaataattaaaatggcacaatt 4337588  T
Q  157 ttattgtttcgtccaaggcaccaagaatctta 188  Q
    ||||| ||| || || | |||||| |||||||    
T  4337587 ttattattttgttcaggacaccaaaaatctta 4337556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 10668948 - 10668837
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaa 144  Q
    ||||||||||| ||||||||||||  |||||||| ||| | |||||||||||||||| |||  ||||||||| ||| |||||||||||||| ||||||||    
T  10668948 tttgattaattatattgaaaatat--tttttaga-aacgttgattataaatgaatctattgagacaaaaaatccaaaaagaaaaatattagaataattaa 10668852  T
Q  145 aagggcacaatttta 159  Q
    |||| | ||||||||    
T  10668851 aaggacgcaatttta 10668837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 18991802 - 18991756
Alignment:
Q  87 attataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatatt 133  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  18991802 attataaatgaatcttgtgcaacaaaaaatgcaagaagaaaaatatt 18991756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 21954571 - 21954402
Alignment:
Q  25 tatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaag 124  Q
    |||||||||||||||  || |||||||||||| |||||||| |||||||||| ||| | |  ||||| ||| | |||||||||||||||||| ||| ||     
T  21954571 tatatttctttttaacttgttttgattaattccattgaaaaaatatttttta-agagccttaattatgaataagtcttttgcaacaaaaaatacaaaaac 21954473  T
Q  125 aaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtcc 197  Q
    ||| |  || | |||| |  |||| || || ||||||| |||||| ||||||| || ||||||||||||||||    
T  21954472 aaagacgttggaataact--aaggacataactttattgattcgtctaaggcacaaaaaatcttaggaccgtcc 21954402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 191
Target Start/End: Original strand, 13229399 - 13229500
Alignment:
Q  86 gattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatc 185  Q
    ||||||||||||||||| ||||||||||||| |||||||||    ||||| ||||||||||||||| |||||| || ||||  |||  ||| ||| ||||    
T  13229399 gattataaatgaatcttgtgcaacaaaaaatacaagaagaa----attagaataattaaaagggcataatttttttctttcacccagtgcatcaaaaatc 13229494  T
Q  186 ttagga 191  Q
    ||||||    
T  13229495 ttagga 13229500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 11274601 - 11274729
Alignment:
Q  33 tttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatat 132  Q
    |||||||  |||||||||||||| |||||| || ||||||| ||||||| || |||||| ||||||| |||||||||||||| | |||||| ||||| ||    
T  11274601 tttttaaattgctttgattaattatattgacaa-atatttt-tagagaattttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaacat 11274698  T
Q  133 taggataatt-aaaagggcacaattttattg 162  Q
    | | ||| || |||||  |||||||||||||    
T  11274699 tggaatagttaaaaagaacacaattttattg 11274729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 32331634 - 32331529
Alignment:
Q  27 tatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaa 126  Q
    ||||||||||| ||   |||| ||||||||| |||||||||| ||||||||||||  |   |||||||| ||||||||||||||||||||  ||||||||    
T  32331634 tatttcttttttattcactttaattaattcttttgaaaatat-ttttttagagaatcttatttataaataaatcttttgcaacaaaaaatataagaagaa 32331536  T
Q  127 aaatatt 133  Q
    || ||||    
T  32331535 aagtatt 32331529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 31236976 - 31236880
Alignment:
Q  99 tcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtc 196  Q
    |||||||||| |||||||||||||||||| | || |  |||||||||| | ||||||||||||  |||||||| |||||  | |||||||||||||||    
T  31236976 tcttttgcaataaaaaatgcaagaagaaagacatcaa-ataattaaaatgacacaattttattaattcgtccagggcacttaaaatcttaggaccgtc 31236880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 180
Target Start/End: Complemental strand, 9524906 - 9524773
Alignment:
Q  43 gctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatt 142  Q
    ||||| ||||||| |||| ||| ||||||||| |  ||||||||||||||||| |||||||| |||  |||||| |||||  ||||||||||  ||||||    
T  9524906 gctttaattaattatattaaaactatatttttaat-gaacttcgattataaataaatcttttacaa-taaaaatacaaga--aaaaatattaaaataatt 9524811  T
Q  143 aaaagggcacaattttattgtttcgtccaaggcaccaa 180  Q
    ||||    | ||||||||||||||||| ||| ||||||    
T  9524810 aaaataaaataattttattgtttcgtcaaagccaccaa 9524773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 31153702 - 31153630
Alignment:
Q  49 attaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||| |||||||||||| ||||| | | ||||| ||| || |||||||||||||||| |||||||||||||    
T  31153702 attaattatattgaaaatatgtttttaa-ataactttgatcatgaatgaatcttttgcaataaaaaatgcaaga 31153630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 34540950 - 34540848
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||| ||||   | |||||||| ||||||||||||||||||||| |   | ||| |||||| ||| ||| |||||||||||||||| || |||    
T  34540950 atatatttcttattaactcgttttgattagttctattgaaaatatatttttaaataatctt-gattatgaataaattttttgcaacaaaaaatacatgaa 34540852  T
Q  124 gaaa 127  Q
    ||||    
T  34540851 gaaa 34540848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 5608079 - 5608186
Alignment:
Q  52 aattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggca 151  Q
    ||||||||||| |||||| ||| ||||||| || |||||| |||| |||||||| ||||||||||  || |||||| | |||   |||||| ||||||||    
T  5608079 aattctattgagaatata-tttctagagaattttgattatgaatg-atcttttgtaacaaaaaatataaaaagaaagacattcaaataatttaaagggca 5608176  T
Q  152 caattttatt 161  Q
    ||| ||||||    
T  5608177 caactttatt 5608186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 19638432 - 19638395
Alignment:
Q  92 aaatgaatcttttgcaacaaaaaatgcaagaagaaaaa 129  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  19638432 aaatgaatcttttacaacaaaaaatgtaagaagaaaaa 19638395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 31246352 - 31246256
Alignment:
Q  99 tcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtc 196  Q
    |||||||||| |||||||||||||| ||| | || |  |||||||||| | ||||||||||||  ||||| || |||||  | |||||||||||||||    
T  31246352 tcttttgcaataaaaaatgcaagaataaagacatcaa-ataattaaaatgacacaattttattaattcgttcagggcacttaaaatcttaggaccgtc 31246256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33344800 - 33344828
Alignment:
Q  1 attattatttttacttagtagttatatat 29  Q
    |||||||||||||||||||||||||||||    
T  33344800 attattatttttacttagtagttatatat 33344828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35122076 - 35122048
Alignment:
Q  1 attattatttttacttagtagttatatat 29  Q
    |||||||||||||||||||||||||||||    
T  35122076 attattatttttacttagtagttatatat 35122048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 21828200 - 21828375
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||||||  || |||||||||| ||||||||||||   |||||||||||||| ||||||||||||||||| |||||||||||||  ||||     
T  21828200 atatatttctttttaacttgttttgattaatgctattgaaaatac--tttttagagaactttgattataaatgaatcttgtgcaacaaaaaataaaagac 21828297  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctgc 201  Q
    |||||||||||| ||||||||||||| |||||||| || ||||| |  ||||||||| ||||||||||||| ||||||    
T  21828298 gaaaaatattagaataattaaaagggtacaatttttttctttcgcctcaggcaccaaaaatcttaggaccggccctgc 21828375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 3351119 - 3351292
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||| |||| ||||||||||||||||||    
T  3351119 atatatttctttttaattcgctttgattaattctattgaaattatattttt-agataactttgattataaatgaatattttacaacaaaaaatgcaagaa 3351217  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccct 199  Q
    ||||||||||   ||||||||||||  |||| |||||||||| || || || ||||| ||||||||| ||||||||    
T  3351218 gaaaaatattttaataattaaaaggaaacaa-tttattgttttgttcagggtaccaaaaatcttagggccgtccct 3351292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 26448410 - 26448578
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||||||||||||   ||||||||||||||| | ||| |||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||    
T  26448410 tatatatttctttttaattcactttgattaattctactaaaagtatatttt-tagagaactttgataataaatgaatcttttgcaacaaaaaatgcaaga 26448508  T
Q  123 agaaaaatattag-gataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttagga 191  Q
    | ||||||||| |  |||||||||| | || ||||||||| |||| || |||||||||  ||||||||||    
T  26448509 aaaaaaatatttgaaataattaaaaagacaaaattttattatttcatcaaaggcaccagaaatcttagga 26448578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 40351831 - 40351695
Alignment:
Q  50 ttaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaaggg 149  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||| |||||||  |||||||||||||||||| ||||||  ||| |||||||||||||    
T  40351831 ttaattctattgaaaatatatttttaa-agaactttgattataaataaatctttatcaacaaaaaatgcaagaaaaaaaat--tagaataattaaaaggg 40351735  T
Q  150 cacaattttattgtttcgtccaaggcaccaagaatcttag 189  Q
     | ||||||||||||||||||||| |||||| ||||||||    
T  40351734 aagaattttattgtttcgtccaagacaccaaaaatcttag 40351695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 12177846 - 12178010
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||| ||||||||||  | ||| ||||||| |||||||||||||||||| ||| |||||  |||||| |||||||||||||||||||||||| ||||    
T  12177846 tatatatatctttttaattcggtttaattaattttattgaaaatatattttt-agaaaacttt-attatagatgaatcttttgcaacaaaaaatgtaaga 12177943  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggac 192  Q
    |||||| |||||| |||||||| ||||||||||||||   ||||||||| |||||||| | |||||||||    
T  12177944 agaaaactattagaataattaatagggcacaatttta---tttcgtccagggcaccaaaactcttaggac 12178010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 35812653 - 35812774
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattga-aaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    |||||||||||||||||  |||||||| ||||||||||| |||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  35812653 atatatttctttttaattcgctttgatcaattctattgataaatatattttt-agataactttgattataaatgaatattttgcaacaaaaaatgcaaga 35812751  T
Q  123 agaaaaatattaggataattaaa 145  Q
    |||| |||||| | |||||||||    
T  35812752 agaataatattggaataattaaa 35812774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 26914412 - 26914291
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaa 144  Q
    ||||||||||| |||||||||||||||||| | | ||| |  ||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  26914412 tttgattaattatattgaaaatatatttttaa-ataacgttaattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatattaaaataattaa 26914314  T
Q  145 aagggcacaattttattgtttcgt 168  Q
    |||| ||| |||||||||||||||    
T  26914313 aaggacac-attttattgtttcgt 26914291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 3940741 - 3940619
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||  |||||| ||||||| |||||||||| |||||| |||||| |||||| ||| ||    
T  3940741 atatatttctttttaatttactttgattaattctatttaaaatat-ctttttaaagaactttgattataaataaatcttgtgcaac-aaaaatacaaaaa 3940644  T
Q  124 gaaaaatattaggataattaaaagg 148  Q
    |||||||||||| ||||||||||||    
T  3940643 gaaaaatattagaataattaaaagg 3940619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 42336035 - 42335888
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||||||||  | ||| ||||||| || ||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||| |||||    
T  42336035 atatatttctttttaattcggtttaattaattatagtgaaaatatatttttaaaa-aactttgattataaatgaatcttttgcaacaaaaaatgtaagaa 42335937  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaa 172  Q
     |||| |||||  || ||||||| | || ||||||||| ||||||||||    
T  42335936 aaaaactattaaaatgattaaaaagacataattttattatttcgtccaa 42335888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 15133376 - 15133233
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaa 144  Q
    |||||||||||||||| |||| |||||||| ||| ||||| |||||||||||||| |||| |||||||||||| ||||| ||||||||| | ||||||||    
T  15133376 tttgattaattctatttaaaaaatattttt-agataactttgattataaatgaatattttacaacaaaaaatgtaagaaaaaaaatatttgaataattaa 15133278  T
Q  145 aagggcacaattttattgtttcgtccaaggcaccaagaatcttagg 190  Q
    || |||| || ||||| ||||||||||  ||| ||| |||||||||    
T  15133277 aaaggcataa-tttatagtttcgtccagcgcaacaaaaatcttagg 15133233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 21129417 - 21129326
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaat 116  Q
    ||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| || |||||||||| |||||||||||| |||||||    
T  21129417 atatatttctttttaatttggtttgattaattctattgaaaatat-ttttttagagaattttgattataaattaatcttttgcaataaaaaat 21129326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 48008661 - 48008521
Alignment:
Q  32 ctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaata 131  Q
    ||||||||| | ||||||||||||||||| |||| |||||||  ||||||||| ||||||||| ||||| ||| |||||||||||   | ||||||||||    
T  48008661 ctttttaatttactttgattaattctattaaaaaaatatttt--agagaactttgattataaaggaatcatttccaacaaaaaat---acaagaaaaata 48008567  T
Q  132 ttaggataattaaaagggcacaattttattgtttcgtccaaggcacc 178  Q
    |||  |||||||||||  ||| |||||||||||| ||||||||||||    
T  48008566 ttaaaataattaaaagaacac-attttattgttttgtccaaggcacc 48008521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 22318733 - 22318618
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaa 144  Q
    ||||||||||| |||||| ||||||||||| ||| |||||  ||||||||| ||||||||||||||||||||| ||||| |||| ||||   |||| |||    
T  22318733 tttgattaattatattgagaatatattttt-agaaaactttaattataaataaatcttttgcaacaaaaaatgtaagaaaaaaactattgaaataactaa 22318635  T
Q  145 aagggcacaattttatt 161  Q
    |||||||||||||||||    
T  22318634 aagggcacaattttatt 22318618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 9429426 - 9429287
Alignment:
Q  24 atatatttctttttaatct-gctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||  | |||| |||||||||||||||||| ||| ||||||||||  |||||| |||    
T  9429426 atatatttcttttta-tctcgttttgattaattctattgaaaatat--tatttaaagaacttcgattataaataaattttttgcaacagcaaatgctaga 9429330  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgttt 165  Q
    || |||||||||  ||||||||||   || |||||||||||||    
T  9429329 agtaaaatattaaaataattaaaataacataattttattgttt 9429287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 26912366 - 26912533
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||||||||  |||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||||||  ||||  ||| ||||||||||||    
T  26912366 atatatttctttttaattcgctttgattaattctattcaagatata-tttttagataactttgattacaaatgaat-atttgtcacataaaatgcaagaa 26912463  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccg 194  Q
     || |||||||| ||||||||||||  |||| |||||| ||| |  |||| || ||| |||||||||||||    
T  26912464 aaataatattagaataattaaaaggatacaa-tttattattttgctcaagacatcaaaaatcttaggaccg 26912533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 33480580 - 33480418
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||| |||  |||||||||||||| |||| ||||||| ||||| | ||||| |  ||||| ||| |||||| ||||| ||||||| ||||||    
T  33480580 atatatttctttctaaattgctttgattaattatattaaaaatatgtttttaa-agaacctt-attatgaattaatcttctgcaataaaaaatacaagaa 33480483  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatctta 188  Q
    |||| | |||   |||||||||||| || |||||||||  ||||| |||||||| || |||||||    
T  33480482 gaaagacattcaaataattaaaaggacataattttattaattcgttcaaggcactaaaaatctta 33480418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 13431754 - 13431651
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||| ||||| || |  ||||| |||||||||||||||||||||| |  |||||| | |||||| ||||||||||| |||||||||||| ||||||    
T  13431754 atatatttatttttgattttttttgaataattctattgaaaatatatttgtg-gagaaccttgattatgaatgaatctttagcaacaaaaaatacaagaa 13431656  T
Q  124 gaaaa 128  Q
     ||||    
T  13431655 aaaaa 13431651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 30095810 - 30095739
Alignment:
Q  43 gctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaa 115  Q
    ||||| ||||||||||||||||| |||||||| ||| ||||| |||||||||||||| |||||||| ||||||    
T  30095810 gcttttattaattctattgaaaaaatattttt-agataactttgattataaatgaatattttgcaagaaaaaa 30095739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 49164891 - 49164721
Alignment:
Q  1 attattatttttacttagtagtta-ta-tatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaa 98  Q
    |||||||||||||||||||||||| || ||| | | ||||||   ||||||||||||  ||| |||||||  |||||||||||  |   |||| ||||||    
T  49164891 attattatttttacttagtagttagtagtatatatatttaattctctttgattaatttaattaaaaatat--tttttagagaatcttatttatgaatgaa 49164794  T
Q  99 tcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttcgtcca 171  Q
    |||||||||  | |||||||||||||||| | |||   |||||||||| | ||||||||||||| || |||||    
T  49164793 tcttttgcagaataaaatgcaagaagaaagacatttacataattaaaatgacacaattttattgattagtcca 49164721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 37996569 - 37996617
Alignment:
Q  86 gattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatatta 134  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||||    
T  37996569 gattataaatgaatcttttgtaacaaaaaatgcaaggaggaaaatatta 37996617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 31799670 - 31799748
Alignment:
Q  116 tgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccg 194  Q
    |||||||||||| | ||||| |||||||| || ||| ||||||||||||||||| | | ||| || |||||||||||||    
T  31799670 tgcaagaagaaacagattagaataattaagagagcaaaattttattgtttcgtctaggacacgaaaaatcttaggaccg 31799748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 36066176 - 36066252
Alignment:
Q  49 attaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaa 127  Q
    ||||||| ||||||||||||||||| ||||||| || |||||| ||| |||||||| |||| |||||| ||||||||||    
T  36066176 attaattgtattgaaaatatatttt-tagagaattttgattatgaataaatcttttacaac-aaaaatacaagaagaaa 36066252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 48393372 - 48393248
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatat-tttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    |||| |||||||||||  || || ||||| |||| || ||||||||| |||||||| || || |||||||||| |||||||  |||||||||||  ||||    
T  48393372 atatttttctttttaacttgtttagattagttctgttaaaaatatatatttttagataattttgattataaataaatctttcacaacaaaaaatataaga 48393273  T
Q  123 agaaaaatattaggataattaaaag 147  Q
    ||||| | |||   |||||||||||    
T  48393272 agaaagacatttaaataattaaaag 48393248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 36186701 - 36186525
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||||||||||||   |||||||||||| |||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| | ||    
T  36186701 tatatatttctttttaattctctttgattaattatattgaaaatatattttt-agagaactttgattataaataaatcttttgcaacaaaaaatgtatga 36186603  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctg 200  Q
    ||||||| ||||| |||||||||||| || |||||||  |||||||  | |||||||| |||||||||| || |||||    
T  36186602 agaaaaacattagaataattaaaaggacaaaattttaccgtttcgtttagggcaccaaaaatcttaggatcgaccctg 36186525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 30257870 - 30257728
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||| |||  | ||||||||||| |||||||||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||     
T  30257870 atatatttcttttcaattcggtttgattaattatattgaaaatatattttt-agagaactttgattataaataaatcttttgaaacaaaaaatgcaagat 30257772  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcg 167  Q
     ||||||||||  ||| ||||||||||||||| |||||||||||    
T  30257771 aaaaaatattaaaatatttaaaagggcacaatcttattgtttcg 30257728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 16547702 - 16547879
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||| |||||||| || ||||||||||| |||||||||||| | ||||||| ||||| ||||||||||| ||||||| |||||||||||| ||||    
T  16547702 tatatatttttttttaatttggtttgattaattatattgaaaatat-tattttagaaaactttgattataaatggatcttttacaacaaaaaatgtaaga 16547800  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctgc 201  Q
    |||||| ||||   |  ||||||||| ||||||||||||||||||||||  |||| || ||||||||||| | ||||||    
T  16547801 agaaaactattgaaactattaaaaggacacaattttattgtttcgtccagagcacaaaaaatcttaggactgaccctgc 16547879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 16647049 - 16646916
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||||||| || |||||||||||||||||||||||| ||||| |||||| ||  |||||||||||||||| |||||||||||||  |||||    
T  16647049 atatatttctttttaatttgttttgattaattctattgaaaatatcttttt-agagaattttaattataaatgaatcttgtgcaacaaaaaataaaagaa 16646951  T
Q  124 gaaaaatattaggataattaaaagggcacaatttt 158  Q
    |||||||||||  ||||||||||||| | ||||||    
T  16646950 gaaaaatattaaaataattaaaagggtataatttt 16646916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 2887116 - 2886975
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    |||| |||| ||||||||  | |||||||||||||||| |||| |||||||| ||||||||| |||||||||| |||| | | |||||||||||||||||    
T  2887116 tatagatttttttttaattcgttttgattaattctattaaaaaaatattttt-agagaactttgattataaataaatcatctacaacaaaaaatgcaaga 2887018  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgttt 165  Q
    |||||| |||||| |||||||||| || |||||||||||||||    
T  2887017 agaaaagtattagaataattaaaaaggtacaattttattgttt 2886975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 38561885 - 38562010
Alignment:
Q  28 atttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaa 127  Q
    ||||||||||||| || |||||||||||| ||||||||||| |||||||||||||||  ||||||||||||| || ||||||||||||| ||| ||||||    
T  38561885 atttctttttaatttgttttgattaattc-attgaaaatat-ttttttagagaactttcattataaatgaatattgtgcaacaaaaaatacaaaaagaaa 38561982  T
Q  128 aatattaggataattaaaagggcacaat 155  Q
    |||||||| | | |||||| ||||||||    
T  38561983 aatattagaacagttaaaatggcacaat 38562010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 37912331 - 37912457
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||| ||||||||||  ||||||||| ||||| ||||||||||||||||  |  ||||| |||||||||||||| |||||||||||| |||| |||     
T  37912331 tatatatatctttttaattcgctttgatttattctcttgaaaatatatttttgggt-aactttgattataaatgaatattttgcaacaaacaatgtaagg 37912429  T
Q  123 agaaaaatattaggataattaaaagggc 150  Q
    ||||||||||| | ||||||||||||||    
T  37912430 agaaaaatatttgaataattaaaagggc 37912457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 34345968 - 34346087
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||| ||| || |||||||| || |||||||||||||||||| | |||| || |||| |||||||| ||||||||||||||||| ||||||    
T  34345968 atatatttctttt-aatttggtttgattagttatattgaaaatatattttt-atagaattttgattctaaatgaa-cttttgcaacaaaaaatacaagaa 34346064  T
Q  124 gaaaaatattaggataattaaaa 146  Q
    |||||||||||| ||| ||||||    
T  34346065 gaaaaatattagaatatttaaaa 34346087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 5163831 - 5163939
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||| ||||||||||  | ||||||||||| |||||| ||||| | ||||||| ||||| |||||||||||||||||||| ||||||||||| |||||    
T  5163831 atatatatctttttaattcggtttgattaattatattgagaatat-tattttagaaaactttgattataaatgaatcttttgtaacaaaaaatgtaagaa 5163929  T
Q  124 gaaaaatatt 133  Q
    ||||| ||||    
T  5163930 gaaaactatt 5163939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 34909364 - 34909237
Alignment:
Q  66 tatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgttt 165  Q
    ||||||||| | | ||||| || ||||||||||| ||||||||||||||||| |||||||||| ||||   |||||||||||| || |||||||||||||    
T  34909364 tatatttttaaaaaaactttgactataaatgaatattttgcaacaaaaaatgtaagaagaaaattattgaaataattaaaaggacaaaattttattgttt 34909265  T
Q  166 cgtccaaggcaccaagaatcttaggacc 193  Q
     | | ||| || ||| ||||||||||||    
T  34909264 tgcctaagacatcaaaaatcttaggacc 34909237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 4206410 - 4206290
Alignment:
Q  43 gctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatt 142  Q
    |||||||||||||||||| |||| ||| |||| ||| |||||  ||||||||||||| ||||||||||||||||||||||| ||||| ||| | ||||||    
T  4206410 gctttgattaattctatttaaaaaatactttt-agataactttaattataaatgaatattttgcaacaaaaaatgcaagaa-aaaaaaatt-gaataatt 4206314  T
Q  143 aaaagggcacaattttattgtttcg 167  Q
    | || ||||||| ||||||||||||    
T  4206313 acaaaggcacaa-tttattgtttcg 4206290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 44157263 - 44157389
Alignment:
Q  33 tttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatat 132  Q
    |||| ||| |||||||||||||||||||  ||||||| |||||||||||  | |||||| ||||||  ||||||| |||||| | |||||||||| ||||    
T  44157263 ttttcaatttgctttgattaattctattagaaatata-tttttagagaaacttgattatgaatgaa-attttgcagcaaaaattacaagaagaaatatat 44157360  T
Q  133 taggataattaaaagggcacaattttatt 161  Q
    |   |||||||||||| ||||||| ||||    
T  44157361 tcaaataattaaaaggacacaattctatt 44157389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 32415357 - 32415446
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaat 116  Q
    ||||||||||||||||     ||||||||||| ||||||| ||||   ||||||||||| |||||||| |||| |||||||||||||||||||    
T  32415357 atatatttctttttaactcattttgattaattttattgaatatat---ttttagagaacctcgattatgaatgcatcttttgcaacaaaaaat 32415446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 28556674 - 28556563
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaa 144  Q
    ||||||||||| |||| ||||||||||||| | ||||||| ||| ||||| |||||||| | || |||||||| || || ||||| |||   ||||||||    
T  28556674 tttgattaattatattaaaaatatatttttaa-agaactttgatgataaacgaatctttggaaataaaaaatgtaaaaaaaaaaa-attgaaataattaa 28556577  T
Q  145 aagggcacaatttt 158  Q
    ||||||||||||||    
T  28556576 aagggcacaatttt 28556563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 38134112 - 38134234
Alignment:
Q  26 atatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaaga 125  Q
    ||||||||||||||   | ||||||||||| |||| |||||||  |||||||||||| |   |||  ||||||||||||||||||||||||| ||||| |    
T  38134112 atatttctttttaactcgatttgattaattatattaaaaatat--tttttagagaaccttatttacgaatgaatcttttgcaacaaaaaatgtaagaaaa 38134209  T
Q  126 aaaatattaggataattaaaagggc 150  Q
    || | ||| | |||| |||||||||    
T  38134210 aagacatttgaataactaaaagggc 38134234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 18830064 - 18829973
Alignment:
Q  24 atatatttctttttaatc-tgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaa 115  Q
    |||||||||||||| | | |||| ||||||||| |||||||||||||| |||||||||||   |||||| ||||||| |||||||| ||||||    
T  18830064 atatatttcttttttaacatgctatgattaattttattgaaaatatat-ttttagagaacaatgattatgaatgaattttttgcaaaaaaaaa 18829973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 40877015 - 40876936
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatctttt 104  Q
    ||||||||||||||||  || || ||||||||||||||||||||||| ||||| ||||| | |||||| | ||||||||||    
T  40877015 atatatttctttttaacttgtttggattaattctattgaaaatatat-ttttatagaaccttgattatgagtgaatctttt 40876936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 17271329 - 17271259
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaat 116  Q
    ||||||||||| |||||||||||||| ||||||  ||||| ||||||||||||||||| ||| | |||||||    
T  17271329 tttgattaattatattgaaaatatat-ttttagcaaactttgattataaatgaatcttgtgcgataaaaaat 17271259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 15925950 - 15926011
Alignment:
Q  101 ttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattg 162  Q
    ||||||||||||||||| |||||||||||||||   ||||||| || || ||||||||||||    
T  15925950 ttttgcaacaaaaaatgtaagaagaaaaatatttaaataattataaaggtacaattttattg 15926011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 14952039 - 14952134
Alignment:
Q  51 taattctattgaaaatatattttttagagaac-ttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaa 146  Q
    |||| |||||||||||| |||||| ||||||| || |||||  ||||||| |||||||||||||| || || |||||| ||||| | ||||||||||    
T  14952039 taatcctattgaaaatacattttt-agagaacctttgattaggaatgaatattttgcaacaaaaattgtaaaaagaaagatattcgaataattaaaa 14952134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 28149029 - 28149094
Alignment:
Q  87 attataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaa 154  Q
    ||||||||| ||| |||| ||||||||||| |||||| ||||||||||| |||||| |||||||||||    
T  28149029 attataaat-aattttttccaacaaaaaatacaagaa-aaaaatattagaataatttaaagggcacaa 28149094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 33819167 - 33819091
Alignment:
Q  88 ttataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttc 166  Q
    ||||||||| ||||||| ||| |||||||||||||  |||||||||   |||| ||||| || ||||||||||||||||    
T  33819167 ttataaatggatcttttacaataaaaaatgcaaga--aaaaatatttaaataactaaaatggtacaattttattgtttc 33819091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 35280999 - 35280919
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaa 127  Q
    |||||||||||||||||||||||||||||| | | || |   ||||| |||||||||||| ||  ||||||||||||||||||    
T  35280999 tttgattaattctattgaaaatatatttttaa-ataattatcattatgaatgaatctttttcat-aaaaaatgcaagaagaaa 35280919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 28148948 - 28149004
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatctt 102  Q
    ||||||||||| ||||||||||| | |||||| ||||||| |||||||||| ||||||    
T  28148948 tttgattaattatattgaaaata-aatttttaaagaactttgattataaattaatctt 28149004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 45443652 - 45443747
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatat-tttttagagaactt---cgattataaatgaatcttttgcaacaaaaaa 115  Q
    |||||||| |||||||  || ||| |||||||| ||||||||||||| || ||||||||| |    |||||| ||||||| |||||||||||||||    
T  45443652 atatatttttttttaacttgttttaattaattccattgaaaatatatattcttagagaaccttgatgattatgaatgaattttttgcaacaaaaaa 45443747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 5164486 - 5164542
Alignment:
Q  138 taattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccg 194  Q
    |||| |||||| |||||||||||||||||||||| || | ||| ||||||| |||||    
T  5164486 taataaaaaggacacaattttattgtttcgtccagggtatcaaaaatcttaagaccg 5164542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 18626697 - 18626868
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||||| | || ||||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  18626697 atatatttctttttactttgttttgattaattctattgaagaaatatttttt-gagaactttgattataaatgaatcttgtgcaacaaaaaatacaagaa 18626795  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctg 200  Q
        |||||||  |||||||||||| |||||||||||||||||| | | |||||||| || |||||||||| |||||    
T  18626796 ----aatattaaaataattaaaaggacacaattttattgtttcgcctatggcaccaaaaaacttaggaccggccctg 18626868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 20870668 - 20870842
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||||||||||||   |||||||||||| |||||| ||||||||||| ||| ||||| |||||||||||||| || |||||||||||||||||||    
T  20870668 tatatatttctttttaattccctttgattaattttattgataatatattttt-agataactttgattataaatgaatattctgcaacaaaaaatgcaaga 20870766  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctg 200  Q
    | ||||||||||  |||||||||| || |||| |||||||||||||||| ||||| || |||  |||||||| |||||    
T  20870767 a-aaaaatattaaaataattaaaatggtacaa-tttattgtttcgtccagggcactaaaaattctaggaccgaccctg 20870842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 32257775 - 32257639
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||| |||| ||||||||| |||||||||||||| || || |||||||||||||||||    
T  32257775 atatatttttttttaatttgctttgattaattttattgaaaatatactttt-agagaactttgattataaatgaattttgtgtaacaaaaaatgcaagaa 32257677  T
Q  124 gaaaaatattaggataattaaaagggcacaattttatt 161  Q
     ||||| ||| | ||||||||||||||||| |||||||    
T  32257676 caaaaaaattggaataattaaaagggcacagttttatt 32257639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 3193612 - 3193437
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||||||  |||||||| ||||| |||||||||||| ||||| | ||||||| |||||| |||||||||||||||| ||||||||||||||    
T  3193612 atatatttctttttaaattgctttgaataattatattgaaaatatgtttttaa-agaactttgattatgaatgaatcttttgcaataaaaaatgcaagaa 3193514  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctg 200  Q
    |||| | |||   |||||||||||| || |||||||||  |||| ||| ||| | || ||||||||||||| |||||    
T  3193513 gaaagacattcaaataattaaaaggacataattttattaattcgcccagggcgctaaaaatcttaggaccggccctg 3193437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 7886702 - 7886539
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||| | |||||| ||||| |||||||| ||||| ||||| ||||||||| | |||||    
T  7886702 atatgtttctttttaattcgctttgattaattctattgaaaatata-tgtttagataactttgattataagtgaatattttggaacaaaaaa-gtaagaa 7886605  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttagg 190  Q
    ||||||| || | |||||||||| ||||||| |||||||||||| ||  | |||||| |||||||||    
T  7886604 gaaaaatgtttgaataattaaaatggcacaa-tttattgtttcgcccgggacaccaaaaatcttagg 7886539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 16570586 - 16570445
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||||||||   ||||||||||||||||| ||||||||||||| ||||||||| ||||| |||| |||||||||| ||| ||||||||| ||    
T  16570586 atatatttctttttaattcactttgattaattctattaaaaatatattttt-agagaactttgattaaaaattaatcttttgccacagaaaatgcaaaaa 16570488  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttc 166  Q
     |||||||||   ||||||| || |||| ||||||||| ||||    
T  16570487 caaaaatattgaaataattagaatggcataattttattatttc 16570445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 25034442 - 25034282
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||| ||| || ||||||||||| |||| ||||| ||||||| ||| |||||  || |||||||||| ||||||||||||||||| |||||    
T  25034442 atatatttcttttaaat-tggtttgattaattgtattaaaaatgtattttt-agaaaactttaataataaatgaattttttgcaacaaaaaatgtaagaa 25034345  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatct 186  Q
    ||||| ||||    ||||||||| | || ||||||||||||||||||| | |||||| |||||    
T  25034344 gaaaactattgaagtaattaaaatgacataattttattgtttcgtccaggacaccaaaaatct 25034282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 502843 - 502931
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaa 115  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| ||||||    
T  502843 atatatttctttttaa-ct-ctttgattaattctattgaaaatatatttt-tagagaactttgattatgaatgaatcttttgcaaaaaaaaa 502931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 12263727 - 12263638
Alignment:
Q  33 tttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||  |||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||| |||| |||||||||    
T  12263727 tttttaattcgctttgattaattctattgaaaatatat-ttttaaagaactttgattatagatgaatcttttgcaataaaagatgcaagaa 12263638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 200
Target Start/End: Complemental strand, 10325672 - 10325515
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaat---gcaagaagaaaaatattaggataat 141  Q
    ||||||||||| |||||| |||| |||||| ||| ||||| ||| ||||||||||||||||||||||||||    | | ||  |||| |||  | |||||    
T  10325672 tttgattaattatattgagaatacattttt-agaaaactttgatcataaatgaatcttttgcaacaaaaaaaaaagtaggattaaaactatcggaataat 10325574  T
Q  142 taaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctg 200  Q
    |||||||||||||||||||||||||||||| | ||||||  ||||||| |||| |||||    
T  10325573 taaaagggcacaattttattgtttcgtccaggacaccaaatatcttagaaccgaccctg 10325515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 3597002 - 3596880
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||||||||  | |||||||||||||||| ||||||||| ||||| | || || || ||||| ||||||||||| || |||||||  || ||    
T  3597002 atatatttctttttaattcgttttgattaattctattaaaaatatat-ttttataaaaatttgaatataagtgaatcttttgaaaaaaaaaatataaaaa 3596904  T
Q  124 gaaaaatattaggataattaaaag 147  Q
     |||| |||||| |||||||||||    
T  3596903 taaaagtattagaataattaaaag 3596880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 20017605 - 20017649
Alignment:
Q  125 aaaaatattaggataattaaaagggcacaattttattgtttcgtc 169  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  20017605 aaaaatattagaataattaaaagggcacaattttattgtttcgtc 20017649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 39542481 - 39542583
Alignment:
Q  57 tattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaatt 156  Q
    |||||||||||| ||||| | ||||||| |||||| ||| || ||||| ||| |||||||||||||||||| | |||   ||||||||||||||||||||    
T  39542481 tattgaaaatatgtttttaa-agaactttgattatgaataaa-cttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacaatt 39542578  T
Q  157 ttatt 161  Q
    |||||    
T  39542579 ttatt 39542583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 37147925 - 37147841
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaat 130  Q
    ||||||||||| |||||||||||||||||| | | | |||  ||||||||||||| |||| ||| ||||||| |||||| ||||||    
T  37147925 tttgattaattgtattgaaaatatatttttaaaaaacctta-attataaatgaatattttacaagaaaaaatacaagaaaaaaaat 37147841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 16569364 - 16569290
Alignment:
Q  50 ttaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaa 127  Q
    |||||||||||||||||||  |||||||| ||| | || ||||||| ||||| |||||  ||||||||||||||||||    
T  16569364 ttaattctattgaaaatat-gtttttagaaaaccttgaatataaataaatctattgca--aaaaaatgcaagaagaaa 16569290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 39790064 - 39790027
Alignment:
Q  110 aaaaaatgcaagaagaaaaatattaggataattaaaag 147  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  39790064 aaaaaatgcaagaagaaaaatattagaatatttaaaag 39790027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 14499104 - 14499064
Alignment:
Q  87 attataaatgaatcttttgcaacaaaaaatgcaagaagaaa 127  Q
    ||||||||||||||||||  |||||||||| ||||||||||    
T  14499104 attataaatgaatctttttgaacaaaaaatacaagaagaaa 14499064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 43515947 - 43515782
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaa-tgcaaga 122  Q
    |||||| |||||||||| || ||||||||||| |||| | |||||||| || ||| ||||| |||||||||||||||||||||||||||||| || ||||    
T  43515947 atatatatctttttaatttggtttgattaattatattaagaatatattgtt-agaaaactttgattataaatgaatcttttgcaacaaaaaaatgtaaga 43515849  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttag 189  Q
    |||||| |||||| |||| |||||||||||||||||||||||||| ||| | |||||| ||||||||    
T  43515848 agaaaactattagaataactaaaagggcacaattttattgtttcgcccaggacaccaaaaatcttag 43515782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 12320443 - 12320611
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||| ||||||||||  | ||||||||||| |||||| ||||| ||||||| | |||||||||||||||||||| ||||||||||||||||| |||||    
T  12320443 atatatatctttttaattcggtttgattaattatattgagaatat-ttttttaaaaaacttcgattataaatgaatattttgcaacaaaaaatgtaagaa 12320541  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggacc 193  Q
    ||||| |||| | ||||||||||| ||||||||||||||||| || || | |||||| |||||| |||||    
T  12320542 gaaaactattggaataattaaaagagcacaattttattgttttgttcaggacaccaaaaatcttcggacc 12320611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 35372228 - 35372031
Alignment:
Q  1 attattatttttacttagtagtta----tatat-ttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaat 95  Q
    ||||||||||||||||||||||||    ||||| || ||||||||    ||||||||||| |||||||||||||||||| ||||| |||  ||||||||     
T  35372228 attattatttttacttagtagttaggactatatattttttttaattcagtttgattaattatattgaaaatatattttt-agagagctttaattataaac 35372130  T
Q  96 gaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccg 194  Q
    ||||||  |||||||||||||| ||||||||||||||||| ||| |||||| ||||||| |||||||||| ||||| |||||||| ||| ||| |||||    
T  35372129 gaatctcatgcaacaaaaaatgtaagaagaaaaatattagaatatttaaaatggcacaactttattgttttgtccagggcaccaaaaattttatgaccg 35372031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 23870086 - 23870259
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||| | ||||||||  | |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||| |||||||    
T  23870086 atatatatttttttaattcgttttgattaattctattgaaaatatattttt-agataactttgattataaatgaatattttgcaacaaaaaaagcaagaa 23870184  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctg 200  Q
     ||||| |||   |||||||||| ||  ||| |||||||||||| |||||||||||| ||||||||||||| |||||    
T  23870185 -aaaaaaattgtaataattaaaaaggttcaa-tttattgtttcggccaaggcaccaaaaatcttaggaccggccctg 23870259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 3643235 - 3643060
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||||||| ||| |||||||||| |||||||||  ||||||| | ||| ||| ||| |||||||||| || ||||||||||||| ||||||    
T  3643235 atatatttctttttaatttgcattgattaattatattgaaaagttatttttaa-agagctttgataataaatgaattttgtgcaacaaaaaatccaagaa 3643137  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctg 200  Q
    |||||||||| | |||||||||| | ||||||||||||||||||  || |||||||  | | ||||||||| |||||    
T  3643136 gaaaaatattggaataattaaaatgacacaattttattgtttcgctcagggcaccataagttttaggaccggccctg 3643060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 5627536 - 5627691
Alignment:
Q  30 ttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaa 129  Q
    |||||||||||  | ||||||||||| ||||||||| || ||||| | | ||||  |||||||||||||| |||||||||||||||||||| ||||||||    
T  5627536 ttctttttaattcgttttgattaattatattgaaaaaatgttttt-atataactctgattataaatgaatattttgcaacaaaaaatgcaataagaaaaa 5627634  T
Q  130 tattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatctt 187  Q
    |||| | |||||||||||||||  | |||||||||||||||| |||| ||| ||||||    
T  5627635 tatttgaataattaaaagggcatga-tttattgtttcgtccagggcatcaaaaatctt 5627691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 7102182 - 7102322
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||| |||||||| || |||||||||| |||||||||||| ||||| ||||||||||  |||||||||||||||| ||||||||||| | ||||||    
T  7102182 atatattt-tttttaatttgttttgattaatcctattgaaaatacatttt-tagagaacttttattataaatgaatcttgtgcaacaaaaagtacaagaa 7102279  T
Q  124 gaaaaatattagg--ataattaaaagggcacaattttattgtt 164  Q
    |||||| ||| ||  ||||||||| ||| ||||||||||||||    
T  7102280 gaaaaacattggggaataattaaatgggtacaattttattgtt 7102322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 36071647 - 36071557
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaa 115  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  36071647 atatatttctttttaattttctttgattaattcaattgaaaatatat-ttttagagaactttgattataaatgaatcttatgcaacaaaaaa 36071557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 7853355 - 7853480
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaa 144  Q
    ||||||||||  |||||||||||||||||| ||| ||||| ||||||||||||||  ||||||| ||||| || |||||||||| ||||   ||||||||    
T  7853355 tttgattaatgatattgaaaatatattttt-agaaaactttgattataaatgaattctttgcaataaaaa-tgtaagaagaaaactattgaaataattaa 7853452  T
Q  145 aagggcacaattttattgtttcgtccaa 172  Q
    ||||| ||||||||||||||||||||||    
T  7853453 aagggtacaattttattgtttcgtccaa 7853480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 55147739 - 55147627
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaa 144  Q
    ||||||||||| |||||||||| | ||||| ||||||||| ||||||||||||||||| | |||||||||||  || | |||||||||||| ||||||||    
T  55147739 tttgattaattttattgaaaatgtcttttt-agagaactttgattataaatgaatcttgtacaacaaaaaatagaatatgaaaaatattagaataattaa 55147641  T
Q  145 aagggcacaatttt 158  Q
    ||| ||||||||||    
T  55147640 aagagcacaatttt 55147627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 2113878 - 2114047
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||| |||  |||||||||||||| |||||||||||| ||||| | ||||| | |||||| ||| |||||||||||| ||||||| ||||||    
T  2113878 atatatttctttctaaattgctttgattaattatattgaaaatatgtttttaa-agaaccttgattatgaattaatcttttgcaataaaaaatacaagaa 2113976  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccg 194  Q
    |||| | |||   |||||||||||| || | |||||||| ||||   | ||||| || |||||||||||||    
T  2113977 gaaagacattcaaataattaaaaggacatagttttattgattcgcttagggcactaaaaatcttaggaccg 2114047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 20811598 - 20811471
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||| |||||||  |||||| |||| || |||||||||||||| ||||| |||| || |||||| | ||||  ||||||||| ||||||| ||||    
T  20811598 tatatatttgtttttaacttgctttaattatttatattgaaaatatat-ttttaaagaattttgattatgagtgaagtttttgcaacgaaaaatgaaaga 20811500  T
Q  123 agaaaaatattaggataattaaaagggca 151  Q
    || |||| ||| | |||||||||| ||||    
T  20811499 agcaaaacattcgaataattaaaatggca 20811471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 29118510 - 29118617
Alignment:
Q  24 atatatttctttttaatctgctttga-ttaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||||||||||  |||||| | |||||| ||||||||||||  |||||| ||||||| |||||| ||||||| |||||||| |||||||| || |    
T  29118510 atatatttctttttaaattgcttttaattaattatattgaaaatat-gtttttaaagaactttgattatgaatgaatattttgcaataaaaaatgtaaaa 29118608  T
Q  123 agaaaaata 131  Q
    | |||||||    
T  29118609 aaaaaaata 29118617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 40807914 - 40807834
Alignment:
Q  46 ttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaa 127  Q
    ||||||||||||||| ||||||| ||||| ||| ||| | |||||| |||||||||| | ||||||||||||||| ||||||    
T  40807914 ttgattaattctattaaaaatatgttttt-agataacattgattatgaatgaatcttatccaacaaaaaatgcaaaaagaaa 40807834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 4596550 - 4596447
Alignment:
Q  23 tatatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaaga 122  Q
    ||||||||| ||||||||   |||||||| ||| ||||||||||||||  |  | | | ||| |||||| |||||||||||||||||||||||||||| |    
T  4596550 tatatatttgtttttaattcactttgattgattttattgaaaatatatactagaaaaacctt-gattatgaatgaatcttttgcaacaaaaaatgcaaaa 4596452  T
Q  123 agaaa 127  Q
    |||||    
T  4596451 agaaa 4596447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 25779732 - 25779586
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||||||   |  ||||||||||| | || |||||||| ||| |||| ||||| |||||| |||||||||| ||||||||| ||||||| ||    
T  25779732 atatatttctttttacctttttttgattaattttgttaaaaatata-tttgtagaaaactttgattatgaatgaatcttctgcaacaaagaatgcaaaaa 25779634  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtcca 171  Q
    | || |||||   ||||||| || | | ||| ||||||| ||||||||    
T  25779633 ggaagatattcaaataattagaatgacgcaactttattgattcgtcca 25779586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 32554574 - 32554527
Alignment:
Q  156 tttattgtttcgtccaaggcaccaagaatcttaggaccgtccctgcat 203  Q
    ||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  32554574 tttattgtttcttccaaggcaccaaaaatcttaggaccggccctgcat 32554527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 37226342 - 37226441
Alignment:
Q  94 atgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggacc 193  Q
    |||||||||||||||||||||||| || || ||| | |||   |||||||||||  ||| ||||||||| |||||||||| ||||||  |||||| ||||    
T  37226342 atgaatcttttgcaacaaaaaatgaaataaaaaagacattcaaataattaaaagaacacgattttattgattcgtccaagacaccaaagatcttaagacc 37226441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 48653769 - 48653828
Alignment:
Q  87 attataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaa 146  Q
    ||||| ||||||||||||||||||||| ||||||||||||| | ||| | ||||||||||    
T  48653769 attatgaatgaatcttttgcaacaaaacatgcaagaagaaagacattcgaataattaaaa 48653828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 15986960 - 15986910
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttt 74  Q
    |||||||| |||||||| || ||||||||||||||||||||||||| ||||    
T  15986960 atatatttatttttaatgtgttttgattaattctattgaaaatataatttt 15986910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 29369983 - 29369937
Alignment:
Q  28 atttctttttaatctgctttgattaattctattgaaaatatattttt 74  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||    
T  29369983 atttatttttaatttgttttgattaattctattgaaaatatattttt 29369937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 7746008 - 7745943
Alignment:
Q  87 attataaatgaatc-ttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggca 151  Q
    |||||||||||||  |||| |||||||||||||||||||||| ||||| | |||||||||| ||||    
T  7746008 attataaatgaattattttccaacaaaaaatgcaagaagaaagatatttgaataattaaaaaggca 7745943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 8733093 - 8733029
Alignment:
Q  97 aatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttatt 161  Q
    |||||||||||||||||||||| |||||||||| ||| | ||||| |||| | ||||| ||||||    
T  8733093 aatcttttgcaacaaaaaatgctagaagaaaaacatttgaataataaaaatgccacaactttatt 8733029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 6137756 - 6137808
Alignment:
Q  57 tattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaaca 110  Q
    |||||||||||||| ||| ||||||||| ||||| ||||||||||| |||||||    
T  6137756 tattgaaaatatatattt-agagaactttgattagaaatgaatcttatgcaaca 6137808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 29628342 - 29628269
Alignment:
Q  101 ttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttcgtccaagg 174  Q
    ||||||||||||||||| |||||||| || |||   |||||||||||| ||  | ||||||| |||||||||||    
T  29628342 ttttgcaacaaaaaatgtaagaagaagaacattcaaataattaaaaggacatcactttattggttcgtccaagg 29628269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 7540474 - 7540403
Alignment:
Q  45 tttgattaattctattgaaaata-tattttttagagaacttcgattataaatgaatcttttgcaacaaaaaat 116  Q
    |||||||||||||||| |||||| | ||||||||| | |||   |||| ||||||||||||||||||||||||    
T  7540474 tttgattaattctattaaaaataattttttttagaaaccttat-ttatgaatgaatcttttgcaacaaaaaat 7540403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 40807960 - 40807924
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctatt 60  Q
    |||||||||||||||||  ||||||||||||||||||    
T  40807960 atatatttctttttaattcgctttgattaattctatt 40807924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 51002700 - 51002632
Alignment:
Q  93 aatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttatt 161  Q
    |||||||||||||| | |||||||| ||||||||| | ||| | |||||||||| || |||| ||||||    
T  51002700 aatgaatcttttgcgataaaaaatgtaagaagaaagacatttgaataattaaaaaggaacaagtttatt 51002632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 55147916 - 55147880
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctatt 60  Q
    ||||||||||||||||| || ||||||||||||||||    
T  55147916 atatatttctttttaatttgttttgattaattctatt 55147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 33510187 - 33510019
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||||||||  | |||||||||||| ||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||| ||| ||    
T  33510187 atatatttctttttaattcgttttgattaattccattgaaaatatattttt-agagaactttaattataaatgaatcttttgcaacaaaaaattcaaaaa 33510089  T
Q  124 gaa-aaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggac 192  Q
     ||  || ||||  |||||||||| |||||||||||||||||||| ||  | |||||| |||||||||||    
T  33510088 aaattaaaattaaaataattaaaatggcacaattttattgtttcgccctggacaccaaaaatcttaggac 33510019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 27538875 - 27538708
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||| ||||||||   ||||||||||||||||||||||||||| ||||| | ||||| ||||| |||||||| |||||||||||||||| ||||||    
T  27538875 atatatttatttttaattctctttgattaattctattgaaaatatat-ttttaaataactttgattagaaatgaatattttgcaacaaaaaatacaagaa 27538777  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccg 194  Q
     |||||||||   ||| |||||| || |||| ||||||||||| |||||| |||||| |||||||||||||    
T  27538776 -aaaaatattgaaatagttaaaatggtacaa-tttattgtttcatccaagacaccaaaaatcttaggaccg 27538708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 11365105 - 11365209
Alignment:
Q  43 gctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatt 142  Q
    |||||||||||||| |||||||| |||||||| | | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||    
T  11365105 gctttgattaattcaattgaaaagatatttttaa-ataactttgattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataatt 11365203  T
Q  143 aaaagg 148  Q
    ||||||    
T  11365204 aaaagg 11365209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 15670957 - 15671075
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    ||||||||||||||||| || ||||||||||||||||||||||||  |||||||| ||||| ||||||||||||||||| |||||||||| ||   | ||    
T  15670957 atatatttctttttaatttgttttgattaattctattgaaaatat-ctttttagaaaactttgattataaatgaatcttgtgcaacaaaatat---acaa 15671052  T
Q  124 gaaaaatattaggataattaaaa 146  Q
    |||||||||||| ||||||||||    
T  15671053 gaaaaatattagaataattaaaa 15671075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 33682752 - 33682605
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||||||||   ||||||||||||||||| ||||||| ||||||| ||||| | || |||||| |||||||||| ||||| |||||| ||||    
T  33682752 atatatttctttttaattcactttgattaattctattaaaaatat-ttttttaaagaaccttgactataaaggaatcttttgtaacaacaaatgctagaa 33682654  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaa 172  Q
    |||| | ||| | | |||||||||||||||| ||||||| |||||||||    
T  33682653 gaaagacattcgaaaaattaaaagggcacaactttattgattcgtccaa 33682605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 47000946 - 47000793
Alignment:
Q  33 tttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatat 132  Q
    ||||||||  ||||||||||||||||||||||| |||||||| ||| || || |||||||||||||| ||||||||||||||||  ||||||||||||||    
T  47000946 tttttaattcgctttgattaattctattgaaaa-atattttt-agataattttgattataaatgaatattttgcaacaaaaaatataagaagaaaaatat 47000849  T
Q  133 taggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttag 189  Q
    |   || ||||||||||||||| ||||| |||| ||||| | |||||| ||||||||    
T  47000848 ttaaatgattaaaagggcacaa-tttatagttttgtccatgacaccaaaaatcttag 47000793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 11383651 - 11383791
Alignment:
Q  43 gctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatt 142  Q
    |||||||||||||| |||||||| |||||||| ||| ||||| |||||||||||||| ||||||||||||||||||   || |||||||||   ||||||    
T  11383651 gctttgattaattcaattgaaaaaatattttt-agataactttgattataaatgaatattttgcaacaaaaaatgc---aataaaaatatttaaataatt 11383746  T
Q  143 aaaagggcacaattttattgtttcgtccaaggcaccaagaatctta 188  Q
    ||||||| |||| ||||| |||||||||| |||||||| |||||||    
T  11383747 aaaagggtacaa-tttatagtttcgtccagggcaccaaaaatctta 11383791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 171
Target Start/End: Original strand, 33290750 - 33290883
Alignment:
Q  36 ttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattag 135  Q
    ||||| |||||||||||||| |||||||  |||||||| |||||||||| ||| ||||||||||||| |||||||||||| ||||| |||||||||||      
T  33290750 ttaatttgctttgattaattttattgaat-tatatttt-tagagaactttgatcataaatgaatcttgtgcaacaaaaaacgcaaggagaaaaatattga 33290847  T
Q  136 gataattaaaagggcacaattttattgtttcgtcca 171  Q
     |||||||||| | || || ||||||||||||||||    
T  33290848 aataattaaaaagacataactttattgtttcgtcca 33290883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 168752 - 168610
Alignment:
Q  47 tgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaa 146  Q
    |||||||||||||||||||||||||||  ||||||| | |||||| ||||||||||||| |||||||||||||| |||||| | ||||| |||||| |||    
T  168752 tgattaattctattgaaaatatatttt--agagaaccttgattatgaatgaatcttttgtaacaaaaaatgcaacaagaaagaaattagaataatt-aaa 168656  T
Q  147 gggcacaattttattgtttcgtccaaggcaccaagaatcttaggac 192  Q
    ||   ||| ||||||| |||||||| ||||  || |||||||||||    
T  168655 ggatgcaactttattgattcgtccagggcataaaaaatcttaggac 168610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 52704680 - 52704599
Alignment:
Q  86 gattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggcacaattttattgtttcg 167  Q
    ||||||||||||||||| ||||||||||||| ||| | |||||||||||| |||||||||||||||||||||| || |||||    
T  52704680 gattataaatgaatcttgtgcaacaaaaaatacaaaatgaaaaatattagaataattaaaagggcacaatttttttctttcg 52704599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 19149940 - 19149800
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaag-a 122  Q
    |||||||||||||||||  ||||||||||||| ||| ||||||||||||   ||||    | |||||||||| |||||||| ||| |||||||||||| |    
T  19149940 atatatttctttttaattcgctttgattaattatatcgaaaatatattt---agag----ttgattataaataaatcttttacaataaaaaatgcaagaa 19149848  T
Q  123 agaaaaatattaggataattaaaagggcacaattttattgtttcgtcc 170  Q
    | ||||||||| | ||||||||||||||  |||||| |||||||||||    
T  19149847 aaaaaaatattggaataattaaaagggcgtaattttgttgtttcgtcc 19149800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 54417092 - 54417032
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttg 105  Q
    ||||||||||||||| ||||||||| ||||| | |||| || ||||||||||||||||||||    
T  54417092 ctttgattaattctactgaaaatatgtttttaa-agaattttgattataaatgaatcttttg 54417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 17713321 - 17713414
Alignment:
Q  33 tttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaa 128  Q
    |||||||  |||||||||||||| |||||| || ||||||| ||||||| || |||||| ||||||| |||||||| ||||| | |||||| ||||    
T  17713321 tttttaaattgctttgattaattatattgacaa-atatttt-tagagaattttgattatgaatgaatattttgcaagaaaaagtacaagaaaaaaa 17713414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 19014550 - 19014643
Alignment:
Q  33 tttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaa 128  Q
    |||||||  |||||||||||||| |||||| || ||||||| ||||||| || |||||| ||||||| |||||||| ||||| | |||||| ||||    
T  19014550 tttttaaattgctttgattaattatattgacaa-atatttt-tagagaattttgattatgaatgaatattttgcaagaaaaagtacaagaaaaaaa 19014643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 46744007 - 46744076
Alignment:
Q  45 tttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaa 115  Q
    |||||||||||||||| |||||||||||||   ||||| |  ||||| |||||||||||||||| ||||||    
T  46744007 tttgattaattctattaaaaatatatttttgt-agaaccttaattatgaatgaatcttttgcaaaaaaaaa 46744076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 39838529 - 39838593
Alignment:
Q  47 tgattaattctattgaaaatatattttttagagaac-ttcgattataaatgaatcttttgcaacaaaa 113  Q
    ||||||||| ||||||||||||   ||||| ||||| || |||||| |||||||||||||||||||||    
T  39838529 tgattaattatattgaaaatat---ttttaaagaacctttgattatgaatgaatcttttgcaacaaaa 39838593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 24252034 - 24252101
Alignment:
Q  137 ataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccctgcatag 205  Q
    |||||||||||| ||||||||||||| |||||||| | |||||| | |||||||| || ||||| ||||    
T  24252034 ataattaaaagg-cacaattttattgattcgtccaggacaccaatagtcttaggatcggccctggatag 24252101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 1711 - 1824
Alignment:
Q  51 taattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggc 150  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||||   |||||||||| | |    
T  1711 taattttattgaaaatatatttt-tagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaaagac 1809  T
Q  151 acaattttattgttt 165  Q
    ||||||| |||||||    
T  1810 acaatttaattgttt 1824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 9774 - 9887
Alignment:
Q  51 taattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataattaaaagggc 150  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||||   |||||||||| | |    
T  9774 taattttattgaaaatatatttt-tagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaaagac 9872  T
Q  151 acaattttattgttt 165  Q
    ||||||| |||||||    
T  9873 acaatttaattgttt 9887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 387 - 521
Alignment:
Q  44 ctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatattaggataatta 143  Q
    |||| |||||||| |||||||| |||||||| ||| ||||| |||||||||| ||| |||| ||| |||||||||||||||||||||||| | |||||||    
T  387 ctttaattaattcaattgaaaaaatattttt-agataactttgattataaattaatattttacaataaaaaatgcaagaagaaaaatatttgaataatta 485  T
Q  144 aaagggcacaattttattgtttcgtccaaggcaccaa 180  Q
    || |||||||| ||||| |||||||||| | ||||||    
T  486 aaggggcacaa-tttatagtttcgtccaggacaccaa 521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 5884 - 6053
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||||||||| |||  |||||||||||||| |||||||||||| ||||| | |||| || |||||| ||||||| |||||||| ||||||| || |||    
T  5884 atatatttctttctaaattgctttgattaattatattgaaaatatgtttttaa-agaattttgattatgaatgaattttttgcaataaaaaatacatgaa 5982  T
Q  124 gaaaaatattaggataattaaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccg 194  Q
    |||| | |||   |||||||||||| || ||||| |||  |||||||| ||||  || |||||||||||||    
T  5983 gaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccg 6053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 9740 - 9915
Alignment:
Q  24 atatatttctttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaa 123  Q
    |||||| ||||||||||  | ||||||||||| |||||| |||||| |||||||| ||||| |||||||||||||  |||| |||||||||||  || ||    
T  9740 atatatatctttttaattcggtttgattaattatattgagaatata-tttttagaaaactttgattataaatgaa-gttttacaacaaaaaatataaaaa 9837  T
Q  124 gaaaaa--tattaggataatt-aaaagggcacaattttattgtttcgtccaaggcaccaagaatcttaggaccgtccct 199  Q
    ||||||   ||| | |||||| ||||||||||||||||||| ||||| ||| || | ||| |||||||| |||| ||||    
T  9838 gaaaaactaattggaataattaaaaagggcacaattttatt-tttcgcccagggtatcaaaaatcttagaaccggccct 9915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 65088 - 65126
Alignment:
Q  33 tttttaatctgctttgattaattctattgaaaatatatt 71  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  65088 tttttaatttgctttgattaattctattgaaaatatatt 65126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 47535 - 47628
Alignment:
Q  33 tttttaatctgctttgattaattctattgaaaatatattttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaa 127  Q
    |||||||| | |||| ||||||| ||||||||||||| ||| |||  ||||| || ||| ||||||| | ||||||||| ||||||| |||||||    
T  47535 tttttaattttctttaattaattttattgaaaatata-tttgtagcaaactttgaatatgaatgaatttcttgcaacaacaaatgcatgaagaaa 47628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 46944 - 46977
Alignment:
Q  137 ataattaaaagggcacaattttattgtttcgtcc 170  Q
    |||||||||||| |||||||||||||||||||||    
T  46944 ataattaaaaggacacaattttattgtttcgtcc 46977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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