View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_5 (Length: 442)
Name: NF3335_low_5
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 65 - 429
Target Start/End: Complemental strand, 6624252 - 6623894
Alignment:
| Q |
65 |
taaacataaatatattcaaagtgtttacctgcagacatttaaaatggatgaaaatgttacaacatttggtttaatgtgcagctcatacattttttggaag |
164 |
Q |
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|||| ||||||||||||||||| |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
6624252 |
taaaaataaatatattcaaagtatttacctgcaagcattcaaaatggatgaaaatgttgcaacatttggtttaatgtgcagctcatacattttctggaag |
6624153 |
T |
|
| Q |
165 |
agccacaatatgtagtgattgtcttgtcgtccccgcatatccttcattgtgtcaccagctttttcagcagcaagttgctcgaacatcttcaagatccggt |
264 |
Q |
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|||||| |||||||||||| ||||||| |||||| | |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6624152 |
agccacgatatgtagtgatggtcttgttgtcccctcctatccttcattgtgtcacatgctttttcagcagcatgttgctcgaacatcttcaagatccggt |
6624053 |
T |
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| Q |
265 |
cacccccagtcttattctgaaaagaatcatcgataagcatagaagaagattgttcactcggatactcaatggattgcgaagaaccttgaactccatattc |
364 |
Q |
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| T |
6624052 |
catccccggccttattctaaaaagcatcatcgataagcatagaagaagattgttcactcgtatactcaatggattgcgaagaacaatgaactccatattc |
6623953 |
T |
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| Q |
365 |
caaagttggcgattgtcggaatgcatcaattatggagttgaaagtcaccacatttggcttgattc |
429 |
Q |
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| T |
6623952 |
caaagttggc------cggaatgcatcaattttggagttgaaagtcaccaaatttggcttgattc |
6623894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 88 - 429
Target Start/End: Original strand, 5594073 - 5594414
Alignment:
| Q |
88 |
tttacctgcagacatttaaaatggatgaaaatgttacaacatttggtttaatgtgcagctcatacattttttggaagagccacaatatgtagtgattgtc |
187 |
Q |
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| T |
5594073 |
tttacctgcaagcattcaaaatggctgaaaatgtgacaacatttggtttaatgttcagctcatgcattttttggaagagccacaatatgcagtgttggtc |
5594172 |
T |
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| Q |
188 |
ttgtcgtccccgcatatccttcattgtgtcaccagctttttcagcagcaagttgctcgaacatcttcaagatccggtcacccccagtcttattctgaaaa |
287 |
Q |
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| T |
5594173 |
ttgtcgtcccttcctatccttctctctatgaccagctttttcagcagcaagctgctcgaacattttcaagatccggtcatcccctgtcttattctgaaaa |
5594272 |
T |
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| Q |
288 |
gaatcatcgataagcatagaagaagattgttcactcggatactcaatggattgcgaagaaccttgaactccatattccaaagttggcgattgtcggaatg |
387 |
Q |
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| T |
5594273 |
gcaccatcgataagcatagaagacaattgttcagttggatactcaacggcttgtgaagaaccatgaaccccatattccagagttggcgattgtctggagg |
5594372 |
T |
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| Q |
388 |
catcaattatggagttgaaagtcaccacatttggcttgattc |
429 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||| |
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| T |
5594373 |
catcaattatggagttgaaagtgacaacatttggcttgattc |
5594414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 88 - 429
Target Start/End: Complemental strand, 5606839 - 5606498
Alignment:
| Q |
88 |
tttacctgcagacatttaaaatggatgaaaatgttacaacatttggtttaatgtgcagctcatacattttttggaagagccacaatatgtagtgattgtc |
187 |
Q |
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|||||||||| |||| ||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||| |
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| T |
5606839 |
tttacctgcaagcattcaaaatggctgaaaatgtgacaacatttggtttaatgttcagctcatgcattttttggaagagccacaatatgcagtgtttgtc |
5606740 |
T |
|
| Q |
188 |
ttgtcgtccccgcatatccttcattgtgtcaccagctttttcagcagcaagttgctcgaacatcttcaagatccggtcacccccagtcttattctgaaaa |
287 |
Q |
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||||||||| | ||| |||| || | ||||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||||||||| |
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| T |
5606739 |
ttgtcgtccacttctattcttctttaaatgaccagctttttcagcagcaagttgctcgaacatcttcaaaatccggtcctcccccggcttattctgaaaa |
5606640 |
T |
|
| Q |
288 |
gaatcatcgataagcatagaagaagattgttcactcggatactcaatggattgcgaagaaccttgaactccatattccaaagttggcgattgtcggaatg |
387 |
Q |
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| | |||| |||| |||| ||| ||||||||| ||||||| ||||||| | ||||| || | ||||||||| |||||||||||||||||| | ||| |
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| T |
5606639 |
gcaccatcaataacaataggagacgattgttcaatcggatagtcaatggcatcagaagatccattaactccatactccaaagttggcgattgttgagatg |
5606540 |
T |
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| Q |
388 |
catcaattatggagttgaaagtcaccacatttggcttgattc |
429 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||| |
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| T |
5606539 |
catcaattatggagttgaaagtgaccacatttggctttattc |
5606498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 5589112 - 5589200
Alignment:
| Q |
88 |
tttacctgcagacatttaaaatggatgaaaatgttacaacatttggtttaatgtgcagctcatacattttttggaagagccacaatatg |
176 |
Q |
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|||||||||| |||| ||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
5589112 |
tttacctgcaagcattcaaaatggctgaaaatgtgacaacatttggtttaatgttcagctcatgcattttttggaagagccacaatatg |
5589200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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