View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3335_low_7 (Length: 376)

Name: NF3335_low_7
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3335_low_7
NF3335_low_7
[»] chr2 (5 HSPs)
chr2 (1-362)||(35169465-35169826)
chr2 (1-362)||(35177756-35178117)
chr2 (67-376)||(35105790-35106100)
chr2 (67-317)||(35183799-35184049)
chr2 (67-363)||(35054891-35055187)
[»] chr7 (5 HSPs)
chr7 (67-305)||(25484270-25484508)
chr7 (67-305)||(25636511-25636749)
chr7 (69-302)||(25478816-25479049)
chr7 (74-305)||(25442326-25442557)
chr7 (70-178)||(25436458-25436566)
[»] chr5 (1 HSPs)
chr5 (67-179)||(500322-500434)


Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 35169826 - 35169465
Alignment:
Q  1 tttccaattctggccagcgagttacaactttttctggtccttccattgattccagtggagtgcatggctataaatacgatgtgtttatcagtttcagagg 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35169826 tttccaattctggccagcgaggtacaactttttctggtccttccattgattccagtggagtgcatggctataaatacgatgtgtttatcagtttcagagg 35169727  T
Q  101 cgttgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgccttcaaggatgataaaaggctagagaaaggagaa 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35169726 cgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgccttcaaggatgataaaaggctagagaaaggagaa 35169627  T
Q  201 tgcctttcaacgcaacatcaacaagcaattacaaattcacggatttctattgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaa 300  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35169626 tgcttttcaacgcaacatcgacaagcaattacaaattcacggatttctattgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaa 35169527  T
Q  301 tggctaccattgttgaaagatgtaacgatttgcaacgaatagttttccctgttttttatgat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35169526 tggctaccattgttgaaagatgtaacgatttgcaacgaatagttttccctgttttttatgat 35169465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 35178117 - 35177756
Alignment:
Q  1 tttccaattctggccagcgagttacaactttttctggtccttccattgattccagtggagtgcatggctataaatacgatgtgtttatcagtttcagagg 100  Q
    |||||||||| |||||  ||| |||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  35178117 tttccaattcgggccaaggaggtacagctttttccggttcttccattgattccagtggagtgcatagctataaatacgacgtgtttatcagtttcagagg 35178018  T
Q  101 cgttgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgccttcaaggatgataaaaggctagagaaaggagaa 200  Q
        |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||| || |||||||||||||||||||| ||||||||||||    
T  35178017 tccagacacccgcaacacttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgcgttcaaggatgataaaaggctcgagaaaggagaa 35177918  T
Q  201 tgcctttcaacgcaacatcaacaagcaattacaaattcacggatttctattgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaa 300  Q
    ||||||||   ||||| || |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35177917 tgcctttcgctgcaacttcgacaagcaattgcaaattcacggatatctatcgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaa 35177818  T
Q  301 tggctaccattgttgaaagatgtaacgatttgcaacgaatagttttccctgttttttatgat 362  Q
    ||||||| ||||||||| |  ||| | ||||   || ||  |||||||||||||||||||||    
T  35177817 tggctactattgttgaatgtcgtagcaatttcttacaaactgttttccctgttttttatgat 35177756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 67 - 376
Target Start/End: Complemental strand, 35106100 - 35105790
Alignment:
Q  67 gctataaatacgatgtgtttatcagtttcagaggcgttgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgc 166  Q
    |||||| |||||| ||||||||||||||||||||    ||||| || ||||||||||| ||||||||||||||||||||||  ||||||||| |||| ||    
T  35106100 gctatagatacgacgtgtttatcagtttcagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtatttttgc 35106001  T
Q  167 cttcaaggatgataaaaggctagagaaaggagaatgcctttcaacgcaacatcaacaagcaattacaaattcacggatttctattgttgtcttctcagaa 266  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||  |||||| ||  |||||||||  |||||| ||| ||||||||||||||||||| |||    
T  35106000 cttcaaggatgatcaaaggcttgagaaaggagaatccctttcgccgcaacttcttcaagcaattcaaaattctcgggtttctattgttgtcttctctgaa 35105901  T
Q  267 agatatgctgagtcaacatggtgtttggaagaaatggctaccattgttgaaagatgtaacgatttgcaacgaatagttttccctgttttttatgatgatg 366  Q
    |||||||| ||||||||||||||||||||||| ||||||||  ||| |||| |  ||||    ||| ||| ||  |||||||||||||||||||||| ||    
T  35105900 agatatgccgagtcaacatggtgtttggaagagatggctactgttgctgaatgccgtaaaagattgaaacaaactgttttccctgttttttatgatgttg 35105801  T
Q  367 -tccatctcat 376  Q
     ||||||||||    
T  35105800 atccatctcat 35105790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 67 - 317
Target Start/End: Complemental strand, 35184049 - 35183799
Alignment:
Q  67 gctataaatacgatgtgtttatcagtttcagaggcgttgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgc 166  Q
    |||||| ||| |||||||||||||||||| | || | ||||||||| | ||||||||||||||||||| ||||||||||||| |  |||||| |||||||    
T  35184049 gctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcatgctcatctaacaactaagggtattttcgc 35183950  T
Q  167 cttcaaggatgataaaaggctagagaaaggagaatgcctttcaacgcaacatcaacaagcaattacaaattcacggatttctattgttgtcttctcagaa 266  Q
     ||||||||||| ||||| || || |||||||||| ||||||  |||||| || ||||||||||  || ||| |||||||||||||||||||||||  ||    
T  35183949 tttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaa 35183850  T
Q  267 agatatgctgagtcaacatggtgtttggaagaaatggctaccattgttgaa 317  Q
    |  ||||| ||||||||||  ||||||||||| ||||| || |||| ||||    
T  35183849 aattatgcggagtcaacattatgtttggaagagatggccactattgctgaa 35183799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 67 - 363
Target Start/End: Complemental strand, 35055187 - 35054891
Alignment:
Q  67 gctataaatacgatgtgtttatcagtttcagaggcgttgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgc 166  Q
    ||||||||||||  ||||| |||||||| |||||   |||||| || || | |||||||||||||||||||||||||||||| ||||| ||| |||| ||    
T  35055187 gctataaatacggggtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgc 35055088  T
Q  167 cttcaaggatgataaaaggctagagaaaggagaatgcctttcaacgcaacatcaacaagcaattacaaattcacggatttctattgttgtcttctcagaa 266  Q
    |||||||||||| ||||| || |||||||||||||   ||||| |||| | || ||||||||||  |||||| || |||| |||||||||||||||  ||    
T  35055087 cttcaaggatgacaaaagtcttgagaaaggagaatttatttcaccgcagcttctacaagcaattcgaaattcgcgaatttttattgttgtcttctctaaa 35054988  T
Q  267 agatatgctgagtcaacatggtgtttggaagaaatggctaccattgttgaaagatgtaacgatttgcaacgaatagttttccctgttttttatgatg 363  Q
    | |||||| || ||||| |||||||||||||| |||||| | |||| |||  | ||| |  ||||  ||| || |||||||||| ||||||||||||    
T  35054987 acatatgccgaatcaacttggtgtttggaagagatggctgcaattgctgattgttgtgagtatttcaaacaaacagttttccctattttttatgatg 35054891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 67 - 305
Target Start/End: Original strand, 25484270 - 25484508
Alignment:
Q  67 gctataaatacgatgtgtttatcagtttcagaggcgttgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgc 166  Q
    |||||| |||||||||||| ||||||||||||||   ||||||||||||  | |||||||| ||||| || |||||||| | |||||| ||| ||||| |    
T  25484270 gctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctcaatagaaaaggtattttcac 25484369  T
Q  167 cttcaaggatgataaaaggctagagaaaggagaatgcctttcaacgcaacatcaacaagcaattacaaattcacggatttctattgttgtcttctcagaa 266  Q
    |||||||||||| ||   |||| |||||||||||  | ||||| | |||| || ||||||||||  | | ||||| |||||||| ||||| |||||  ||    
T  25484370 cttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgttttctc-caa 25484468  T
Q  267 aga-tatgctgagtcaacatggtgtttggaagaaatggct 305  Q
    ||| ||||||   ||||||||||||||||| |||||||||    
T  25484469 agattatgcttcttcaacatggtgtttggatgaaatggct 25484508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 67 - 305
Target Start/End: Original strand, 25636511 - 25636749
Alignment:
Q  67 gctataaatacgatgtgtttatcagtttcagaggcgttgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgc 166  Q
    |||||||||| ||||| |||||||||||||||||   ||||||||| ||||| |||||||| ||||| ||||||||||| |||||||| ||| |||   |    
T  25636511 gctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcgac 25636610  T
Q  167 cttcaaggatgataaaaggctagagaaaggagaatgcctttcaacgcaacatcaacaagcaattacaaattcacggatttctattgttgtcttctcagaa 266  Q
    |||||||||||| |||  |||  ||||||| |||| | |||||   |||| |   || ||||||| | |||| ||| |||||||  ||||||||||  ||    
T  25636611 cttcaaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctc-caa 25636709  T
Q  267 aga-tatgctgagtcaacatggtgtttggaagaaatggct 305  Q
    ||| ||||||   ||||||||||||||||| |||||||||    
T  25636710 agattatgcttcatcaacatggtgtttggatgaaatggct 25636749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 69 - 302
Target Start/End: Complemental strand, 25479049 - 25478816
Alignment:
Q  69 tataaatacgatgtgtttatcagtttcagaggcgttgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgcct 168  Q
    |||| |||||| ||||||||||||||||||||  ||||||||||||| || |||| ||| ||||| ||||||||||| |||||||| ||| ||||| | |    
T  25479049 tatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgctcatctcactagaaaaggtattttcacgt 25478950  T
Q  169 tcaaggatgataaaaggctagagaaaggagaatgcctttcaacgcaacatcaacaagcaattacaaattcacggatttctattgttgtcttctcagaaag 268  Q
    ||| ||||||  |   ||| |||||||| |||| | |||||   |||| || ||| ||||||  | | || ||  ||||||| |||||||||||||||      
T  25478949 tcatggatgaccagcagctcgagaaaggggaatccatttcactccaacttcgacaggcaattcaacaatcgcgtctttctatagttgtcttctcagaaga 25478850  T
Q  269 atatgctgagtcaacatggtgtttggaagaaatg 302  Q
     |||||||  ||||| ||||||||||| ||||||    
T  25478849 ttatgctggctcaacttggtgtttggatgaaatg 25478816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 305
Target Start/End: Original strand, 25442326 - 25442557
Alignment:
Q  74 atacgatgtgtttatcagtttcagaggcgttgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgccttcaag 173  Q
    |||||||||||| |||||||| |||||   ||||||||| ||  | |||||||| ||||| || | |||||| |||||||| ||| |||||| |||||||    
T  25442326 atacgatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattttcgtcttcaag 25442425  T
Q  174 gatgataaaaggctagagaaaggagaatgcctttcaacgcaacatcaacaagcaattacaaattcacggatttctattgttgtcttctcagaaaga-tat 272  Q
    ||||| |||  |||  ||||||| |||| | |||||   |||| |   || ||||||| | |||| ||| |||||||  ||||||||||  ||||| |||    
T  25442426 gatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctc-caaagattat 25442524  T
Q  273 gctgagtcaacatggtgtttggaagaaatggct 305  Q
    |||   ||||||||||||||||| |||||||||    
T  25442525 gcttcatcaacatggtgtttggatgaaatggct 25442557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 25436566 - 25436458
Alignment:
Q  70 ataaatacgatgtgtttatcagtttcagaggcgttgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgcctt 169  Q
    |||||||||||||||| |||||||| |||||   ||| ||||| ||  ||||||||||||||||  |  ||||||||  |||||| ||| ||||  ||||    
T  25436566 ataaatacgatgtgttcatcagttttagaggttctgagacccgcaattcttttgttgatcatctccactctcatctagttagaaaaggtatttttacctt 25436467  T
Q  170 caaggatga 178  Q
    |||||||||    
T  25436466 caaggatga 25436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 500434 - 500322
Alignment:
Q  67 gctataaatacgatgtgtttatcagtttcagaggcgttgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgc 166  Q
    |||||| ||| |||||||||||||||||||||||    ||||| || |||||||||||||||||||| ||||||||||| | |||||| ||| ||||| |    
T  500434 gctatagatatgatgtgtttatcagtttcagaggttccgacacacgcaacacttttgttgatcatctctatgctcatctcattagaaaaggtattttcac 500335  T
Q  167 cttcaaggatgat 179  Q
    ||| |||||||||    
T  500334 ctttaaggatgat 500322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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