View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3335_low_8 (Length: 374)
Name: NF3335_low_8
Description: NF3335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3335_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 5897478 - 5897762
Alignment:
| Q |
13 |
aaaataaaagatcgacaagatatagaaacaataaaacaaacgtaagcagtaataaaaatgttcaaacaaatcaattaattaagatcacgcaaacaactgg |
112 |
Q |
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| T |
5897478 |
aaaataaaagatcgacaagatatagaaacaataaaacaaacgtaagcagtaataaaaatgttcaaacaaatcaattaattaagatcacgcaaacaaatgg |
5897577 |
T |
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| Q |
113 |
gaaccaacttgaagtaaagtcacgaaaaacctttgctctaagggctagtgaagtcacgagaaacttacacactcgatatataaatggatatacatcgagt |
212 |
Q |
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| T |
5897578 |
gaaccaacttgaagtaaagtcacgaaaaacctttgctctaagggctagtgaagtcacgagaaacttatacactcgatatataaatggatatacatcgagt |
5897677 |
T |
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| Q |
213 |
taactaactagtggaagaacacaattatgtttatagttgaaacnnnnnnngttggaagtagtggtgacccacaaaatctgtgcat |
297 |
Q |
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| T |
5897678 |
taactaactagtggaagaacacaattatgtttatagttgaaacaaaaaaagttggaagtagtggtgacccacaaaatctgtgcat |
5897762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 5897838 - 5897903
Alignment:
| Q |
294 |
gcatatataagcacttgttgaaaaggaacaaaattcacaatctaacttggtaatggtgcctttttt |
359 |
Q |
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| T |
5897838 |
gcatatataagcacttgttgaaaaggaacaaatttcacaatctaacttggtaatggtgcctttttt |
5897903 |
T |
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