View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3336_high_10 (Length: 250)
Name: NF3336_high_10
Description: NF3336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3336_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 54794484 - 54794723
Alignment:
| Q |
1 |
agtagtttataagttaaactagtagctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattaggaa |
100 |
Q |
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| T |
54794484 |
agtagtttataagttaaactagtagctaatagactatagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattagtaa |
54794583 |
T |
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| Q |
101 |
gcgagctaactgatcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54794584 |
gcgagctaactgatcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactaatttacaagtttgtcaaataagataa |
54794683 |
T |
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| Q |
201 |
gtctatgtcaaacaaactcaagcttcacacctgacctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
54794684 |
gtctatgtcaaacaaactcaagcttcacacctgacctatg |
54794723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 52287182 - 52287320
Alignment:
| Q |
1 |
agtagtttataagttaaactagtagctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattaggaa |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52287182 |
agtagtttataagttaaactagtagctaatggactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattagtta |
52287281 |
T |
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| Q |
101 |
gcgagctaactgatcaacataaaatgacataaaagatat |
139 |
Q |
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| T |
52287282 |
gcaaactaactgatcaacataaaatgacataaaagatat |
52287320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 52287391 - 52287484
Alignment:
| Q |
147 |
aagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataagtctatgtcaaacaaactcaagcttcacacctgacctatg |
240 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
52287391 |
aagctttaccacgagtaaccacaaattagtttacaagtttgtcaaataagataggtctatgtcaaacaaactcaagcttcacacctgacatatg |
52287484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 802330 - 802468
Alignment:
| Q |
1 |
agtagtttataagttaaactagtagcta--atagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattagg |
98 |
Q |
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||||||||||||||||| ||| |||| | ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
802330 |
agtagtttataagttaa-ctaatagcaactatagattatagttgaaagtttataaatgaaaagctagttgattgcaattcaagtggttgttagaattaat |
802428 |
T |
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| Q |
99 |
aagcgagctaactgatcaacataaaatgacataaaagatat |
139 |
Q |
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|||| ||||||||| ||||| ||||||||| |||||||| |
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| T |
802429 |
tggcgaactaactgataaacat-aaatgacatgaaagatat |
802468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 34618543 - 34618484
Alignment:
| Q |
38 |
agttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattag |
97 |
Q |
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||||||||| ||||| |||||| |||||||||||||||| ||||| ||| ||||||||| |
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| T |
34618543 |
agttgaaagcttatagctgaaaaactagttgattgatattaaagtgtttggtaaaattag |
34618484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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