View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3336_high_12 (Length: 211)
Name: NF3336_high_12
Description: NF3336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3336_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 37720151 - 37720322
Alignment:
| Q |
22 |
aaaattactttaacaaattaattctaaacttgaaggaagagttacctttaatttaaaagaaattaagaaaataacttgagccaatgaatgaaaggtattt |
121 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37720151 |
aaaattactttaacaaattaattctaaagttgaaggaagagttacctttaatttaaaagaaattaagaaaataaattgagccaatgaatgaaaggtattt |
37720250 |
T |
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| Q |
122 |
tgcgtagaaaaccgagtaaacgttttagaaattgagtcttgcggtgctcttgtttggtagtagctaggggat |
193 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37720251 |
tgcgtagaaaaccgagtaaacattttagaaattgagtcttgcggtgctcttgtttggtagtagctaggggat |
37720322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 37395946 - 37395782
Alignment:
| Q |
19 |
gaaaaaattactttaacaaattaattctaaacttgaaggaagagttacctttaatttaaaagaaattaagaaaataacttgagccaatgaatgaaaggta |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37395946 |
gaaaaaattactttaacaaattaattctaaagttgaaggaagagttacctttaatttaaaagaaattaagaaaataaattgagccaatgaatgaaaggta |
37395847 |
T |
|
| Q |
119 |
ttttgcgtagaaaaccgagtaaacgttttagaaattgagtcttgcggtgctcttgtttggtagta |
183 |
Q |
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| T |
37395846 |
ttttgcgtagaaaaccgagtaaacgttttagaaattgagtcttgcggtgctcttgtttggtagta |
37395782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 37596457 - 37596624
Alignment:
| Q |
22 |
aaaattactttaacaaattaattctaaacttgaaggaagagttacctttaatttaaaagaaattaagaaaataacttgagccaatgaatgaaaggtattt |
121 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37596457 |
aaaattactttaacaaattaattctaaagttgaaggaagagttacctttaatttaaaagaaattaagaaaataaattgagccaatgaatgaaaggtattt |
37596556 |
T |
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| Q |
122 |
tgcgtagaaaaccgagtaaacgttttagaaattgagtcttgcggtgctcttgtttggtagtagctagg |
189 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37596557 |
tgcgtagaaaaccgagtaaacattttagaaattgagtcttgcggtgctcttgtttggtagtagctagg |
37596624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 37825958 - 37826129
Alignment:
| Q |
19 |
gaaaaaattactttaacaaattaattctaaacttgaaggaagagttacctttaatttaaaagaaattaagaaaataacttgagccaatgaatgaaaggta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37825958 |
gaaaaaattactttaacaaattaattctaaagttgaatgaagagttacctttaatttaaaagaaattaagaaaataaattgagccaatgaatgaaaggta |
37826057 |
T |
|
| Q |
119 |
ttttgcgtagaaaaccgagtaaacgttttagaaattgagtcttgcggtgctcttgtttggtagtagctaggg |
190 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37826058 |
ttttgcgtagaaaaacgagtaaacgttttagaaattgagtcttgcggtgctcttgttaggtagtagctaggg |
37826129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 37535202 - 37535373
Alignment:
| Q |
22 |
aaaattactttaacaaattaattctaaacttgaaggaagagttacctttaatttaaaagaaattaagaaaataacttgagccaatgaatgaaaggtattt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||| | ||||||||||||||||||| ||||| |
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| T |
37535202 |
aaaattactttaacaaattaattctaaagttgaatgaagagttatctttaatttaaatgaaattaagaaaattaattgagccaatgaatgaaagttattt |
37535301 |
T |
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| Q |
122 |
tgcgtagaaaaccgagtaaacgttttagaaattgagtcttgcggtgctcttgtttggtagtagctaggggat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37535302 |
tgcgtagaaaaccgagtaaacgttttagaaattgagtcttgcggtgctcttgtttggtagtagctaggggat |
37535373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 37370511 - 37370400
Alignment:
| Q |
82 |
aattaagaaaataacttgagccaatgaatgaaaggtattttgcgtagaaaaccgagtaaacgttttagaaattgagtcttgcggtgctcttgtttggtag |
181 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||| |||| |
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| T |
37370511 |
aattaagaaaataatttgagccaatgaatgaaaggtattttgccaagaaaactgagtaaaggttttagaaattgagtcttggcgtgctcttgttttgtag |
37370412 |
T |
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| Q |
182 |
tagctaggggat |
193 |
Q |
| |
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|||||||||||| |
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| T |
37370411 |
tagctaggggat |
37370400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 37642086 - 37642137
Alignment:
| Q |
22 |
aaaattactttaacaaattaattctaaacttgaaggaagagttacctttaat |
73 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
37642086 |
aaaattactttaacaaattaattctaaagttgaatgaagagttacctttaat |
37642137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 37642135 - 37642223
Alignment:
| Q |
91 |
aataacttgagccaatgaatgaaaggtattttgcgtagaaaaccgagtaaacgttttagaaattgagtcttgcggtgctcttgtttggtagtag |
184 |
Q |
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||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||| |||||| |||| |||||||| |
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| T |
37642135 |
aataaattgagccaatgaatgaa-----ttttgcgtagaaaacatagtaaacattttagaaattgaatcttgcagtgctcctgttaggtagtag |
37642223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 37388695 - 37388633
Alignment:
| Q |
30 |
tttaacaaattaattctaaacttgaaggaagag-ttacctttaatttaaaagaaattaagaaa |
91 |
Q |
| |
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|||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||| |
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| T |
37388695 |
tttaacaaattaattctaaagttgaatgaagagtttacctttaatttttaagaaattaagaaa |
37388633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 193
Target Start/End: Original strand, 14557208 - 14557341
Alignment:
| Q |
51 |
ttgaaggaagagttacctttaatttaaaagaaattaagaaaataacttgagccaatgaatgaaaggtattttgcgtagaaaaccgagtaaacgttttaga |
150 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||| |
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| T |
14557208 |
ttgaatgaagagttacctttaatttaaaagaaattaagaaaataatttgagcc----aatgaaaggtattttgcctagaaaaccaagtaaacgt-----g |
14557298 |
T |
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| Q |
151 |
aattgagtcttgcggtgctcttgtttggtagtagctaggggat |
193 |
Q |
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|||||||||||| |||||||||||| |||||||||| ||||| |
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| T |
14557299 |
aattgagtcttggcgtgctcttgttttgtagtagctaagggat |
14557341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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