View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3336_low_12 (Length: 239)
Name: NF3336_low_12
Description: NF3336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3336_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 54794186 - 54793959
Alignment:
| Q |
1 |
ctattttagtctgtgaa---atcaatgaaaaatcaatgcaatgctgaacaagagctgagctgaaattctgaaaaataccttttgcctatcctctcttgcg |
97 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
54794186 |
ctattttagtatgtgaagctatcaatgaaaaatcaatgcaatgctgaacaagagctcagctgaaattctgaaacatacctttcgcctatcctctcttgcg |
54794087 |
T |
|
| Q |
98 |
cttaagttgcttcatatgttccacgatataagtaataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcataccca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54794086 |
cttaagttgcttcatatgttccacgatataagtaataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagaataccca |
54793987 |
T |
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| Q |
198 |
ccacttgggttgtattcatttacttctt |
225 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
54793986 |
ccacttgggttgtattcatttacttctt |
54793959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 52286867 - 52286640
Alignment:
| Q |
1 |
ctattttagtctgtgaa---atcaatgaaaaatcaatgcaatgctgaacaagagctgagctgaaattctgaaaaataccttttgcctatcctctcttgcg |
97 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
52286867 |
ctattttagtccgtgaagctatcaatgaaaaatcaatgcaatgctgaaaaagtgctcagctgaaattctgaaacatacctttttcctatcctctcttgcg |
52286768 |
T |
|
| Q |
98 |
cttaagttgcttcatatgttccacgatataagtaataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcataccca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
52286767 |
cttaagttgcttcatatgttccacgatataagtaataacttcttttagtgttgccttcctctgttccttgaagttccacagctcatatacagcataccca |
52286668 |
T |
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| Q |
198 |
ccacttgggttgtattcatttacttctt |
225 |
Q |
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|||||||| ||||||||||||||||||| |
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| T |
52286667 |
ccacttggattgtattcatttacttctt |
52286640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 54775541 - 54775680
Alignment:
| Q |
91 |
tcttgcgcttaagttgcttcat-----atgttccacgatataagtaataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgt |
185 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775541 |
tcttgcgcttaagttgcttcatatcatatgttccacgatataagtaataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgt |
54775640 |
T |
|
| Q |
186 |
acagcatacccaccacttgggttgtattcatttacttctt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
54775641 |
acagcatacccaccacttgggttgtattcatttacttctt |
54775680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 801974 - 801803
Alignment:
| Q |
57 |
ctgaaattctgaaaaataccttttgcctatcctc---tcttgcgcttaagttgcttcatatgttccacgatataagtaataacttcttttagtgttgcct |
153 |
Q |
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|||||| ||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||||||| || |||||||| |||||||||| |
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| T |
801974 |
ctgaaagtctgaaacataccttttgcctatcctcctcttttgcgcttaagttgcttcatatgatccacaatataagtgatcacttctttcagtgttgcct |
801875 |
T |
|
| Q |
154 |
tcctctgttccttgaagttccatagctcatgtacagcatacccaccacttgggttgtattcatttacttctt |
225 |
Q |
| |
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|||| | ||| ||||||||||| ||||| |||| ||||||||||||||||||||| || || ||||||| |
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| T |
801874 |
tcctattttctttgaagttccacagctcccaaacagtatacccaccacttgggttgtactcgttaacttctt |
801803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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