View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3336_low_15 (Length: 204)

Name: NF3336_low_15
Description: NF3336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3336_low_15
NF3336_low_15
[»] chr1 (54 HSPs)
chr1 (20-196)||(11891947-11892123)
chr1 (20-191)||(11882761-11882932)
chr1 (20-182)||(11905558-11905720)
chr1 (20-154)||(52818440-52818574)
chr1 (75-131)||(11905325-11905381)
chr1 (75-137)||(11882384-11882446)
chr1 (75-137)||(11891618-11891680)
chr1 (75-137)||(52818601-52818663)
chr1 (77-137)||(11905279-11905339)
chr1 (81-131)||(11888193-11888243)
chr1 (81-131)||(11888241-11888291)
chr1 (81-131)||(11888289-11888339)
chr1 (81-131)||(11888337-11888387)
chr1 (81-131)||(11888385-11888435)
chr1 (81-131)||(11888433-11888483)
chr1 (81-131)||(11888481-11888531)
chr1 (81-131)||(11888529-11888579)
chr1 (81-131)||(11888577-11888627)
chr1 (81-131)||(11888625-11888675)
chr1 (81-131)||(11888673-11888723)
chr1 (81-131)||(11888721-11888771)
chr1 (81-131)||(11888769-11888819)
chr1 (81-131)||(11888817-11888867)
chr1 (81-131)||(11888865-11888915)
chr1 (81-131)||(11888913-11888963)
chr1 (81-131)||(11888961-11889011)
chr1 (81-131)||(11889009-11889059)
chr1 (81-131)||(11889057-11889107)
chr1 (81-131)||(11889105-11889155)
chr1 (81-131)||(11889153-11889203)
chr1 (81-131)||(11889201-11889251)
chr1 (81-131)||(11889249-11889299)
chr1 (81-131)||(11889297-11889347)
chr1 (81-131)||(11889345-11889395)
chr1 (81-131)||(11889393-11889443)
chr1 (81-131)||(11889441-11889491)
chr1 (81-131)||(11889489-11889539)
chr1 (47-137)||(11902643-11902733)
chr1 (47-131)||(11880143-11880227)
chr1 (75-131)||(11882480-11882536)
chr1 (75-131)||(11891714-11891770)
chr1 (75-131)||(52818799-52818855)
chr1 (75-137)||(11882336-11882398)
chr1 (75-137)||(11882432-11882494)
chr1 (75-137)||(11891570-11891632)
chr1 (75-137)||(11891666-11891728)
chr1 (75-137)||(11905469-11905531)
chr1 (81-127)||(52818851-52818897)
chr1 (78-131)||(11889630-11889683)
chr1 (47-131)||(11880239-11880323)
chr1 (81-121)||(11889537-11889577)
chr1 (81-137)||(11889777-11889833)
chr1 (81-137)||(11902581-11902637)
chr1 (47-131)||(11902739-11902823)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 54)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 11891947 - 11892123
Alignment:
Q  20 tccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatctcct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11891947 tccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctcccaactactacaaatcccctccaccaccatcgccatctcct 11892046  T
Q  120 ccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttacatctctgctcctcc 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  11892047 ccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttacatctatgcttctcc 11892123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 11882761 - 11882932
Alignment:
Q  20 tccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatctcct 119  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11882761 tccaccacctccttaccactatcaaagtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccgtctcct 11882860  T
Q  120 ccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttacatctctgct 191  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  11882861 ccacctccttaccactatgtgagtcctcccccaccagtaaagtcacctccaccaccaacttatatctatgct 11882932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 11905558 - 11905720
Alignment:
Q  20 tccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatctcct 119  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  11905558 tccaccacctccttatcactatcaaagtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccaccgtctccatctcct 11905657  T
Q  120 ccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttac 182  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  11905658 ccacctccgtaccattacgtgagtcctcccccaccagtaaagtctcctccaccatcagtttac 11905720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 52818574 - 52818440
Alignment:
Q  20 tccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatctcct 119  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||||||||||||||| || | ||||||    
T  52818574 tccaccacctccttattactatcaaagtcctcctccaccatctcccactcctcatactccctaccactacaaatcccctccaccaccaacggcgtctcct 52818475  T
Q  120 ccacctccataccattacgtgagtcctcccccacc 154  Q
    |||||||| |||||||| |||||||| ||||||||    
T  52818474 ccacctccttaccattatgtgagtccccccccacc 52818440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 11905325 - 11905381
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||    
T  11905325 cctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatac 11905381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 11882384 - 11882446
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||| |||||    
T  11882384 cctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattac 11882446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 11891618 - 11891680
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||| |||||    
T  11891618 cctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattac 11891680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 52818663 - 52818601
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    |||||||||||||||||||| |||||||||||||| || || ||||||||||| ||| |||||    
T  52818663 cctccctactactacaaatcacctccaccaccatccccgtcacctccacctccttactattac 52818601  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 11905279 - 11905339
Alignment:
Q  77 tccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    ||||||||| |||||||| |||||||||||||||||||| || |||||||| ||| |||||    
T  11905279 tccctactattacaaatcacctccaccaccatcgccatcaccaccacctccctactattac 11905339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888193 - 11888243
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888193 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888241 - 11888291
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888241 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888289 - 11888339
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888289 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888337 - 11888387
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888337 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888385 - 11888435
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888385 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888433 - 11888483
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888433 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888481 - 11888531
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888481 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888529 - 11888579
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888529 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888577 - 11888627
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888577 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888625 - 11888675
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888625 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888673 - 11888723
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888673 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888721 - 11888771
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888721 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888769 - 11888819
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888769 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888817 - 11888867
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888817 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888865 - 11888915
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888865 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888913 - 11888963
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888913 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11888961 - 11889011
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888961 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11889009 - 11889059
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889009 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11889057 - 11889107
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889057 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11889105 - 11889155
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889105 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11889153 - 11889203
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889153 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11889201 - 11889251
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889201 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11889249 - 11889299
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889249 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11889297 - 11889347
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889297 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11889345 - 11889395
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889345 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889395  T

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Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11889393 - 11889443
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889393 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11889441 - 11889491
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889441 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 11889489 - 11889539
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889489 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 11902643 - 11902733
Alignment:
Q  47 tcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    ||||||||| |||||||| ||| | ||| | || ||||| |||||||| || |||||||| || |||||||||||||| |||||| |||||    
T  11902643 tcctcctcctccatctcctattccccatacaccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatactattac 11902733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 11880143 - 11880227
Alignment:
Q  47 tcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||| |||||||| ||| | ||| | || ||||| |||||||| || |||||||| || |||||||||||||| ||||||    
T  11880143 tcctcctcctccatctcctattccccatacaccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11880227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 11882480 - 11882536
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || ||||||||||||    
T  11882480 cctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatac 11882536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 11891714 - 11891770
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || ||||||||||||    
T  11891714 cctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatac 11891770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 52818855 - 52818799
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||| || ||||||||||| |||||||||||| | ||||| |||||||||||||||    
T  52818855 cctccttattactacaaatcacctccaccaccaaccccatcacctccacctccatac 52818799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 11882336 - 11882398
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11882336 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattac 11882398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 11882432 - 11882494
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11882432 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactattac 11882494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 11891570 - 11891632
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11891570 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattac 11891632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 11891666 - 11891728
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11891666 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactattac 11891728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 11905469 - 11905531
Alignment:
Q  75 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    ||||||||||| |||||||| ||||||||||| || ||||| || |||||||| ||| |||||    
T  11905469 cctccctactattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattac 11905531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 52818897 - 52818851
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctcc 127  Q
    ||||| ||| ||||||||||||||||||| |||||||| ||||||||    
T  52818897 tactattaccaatcccctccaccaccatcaccatctccaccacctcc 52818851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 11889630 - 11889683
Alignment:
Q  78 ccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||||| ||||| || |||||||| || |||||||||||||| ||||||    
T  11889630 ccctactactataaatcacccccaccaccttcaccatctcctccaccaccatac 11889683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 11880239 - 11880323
Alignment:
Q  47 tcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||| |||||||| ||| | | | | || ||||| |||||||| || |||||||| || |||||||||||||| ||||||    
T  11880239 tcctcctcctccatctcctattccccgtacaccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11880323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 11889537 - 11889577
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctcc 121  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  11889537 tactactacaaatccccacctccaccatcgccttctcctcc 11889577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 11889777 - 11889833
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    ||||| ||||| ||||| |||||||| || |||||||||||||| |||||| |||||    
T  11889777 tactattacaagtccccaccaccaccttcaccatctcctccaccaccatactattac 11889833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 11902581 - 11902637
Alignment:
Q  81 tactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 137  Q
    ||||| ||||| || ||||||||||| || |||||||||||||| |||||| |||||    
T  11902581 tactattacaagtctcctccaccaccttcaccatctcctccaccaccatactattac 11902637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 11902739 - 11902823
Alignment:
Q  47 tcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 131  Q
    ||||||||| |||||||| ||| | | | | || ||||| |||||||| || |||||||| || |||||||||||||| ||||||    
T  11902739 tcctcctcctccatctcctattccccgtacaccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11902823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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