View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3336_low_2 (Length: 544)

Name: NF3336_low_2
Description: NF3336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3336_low_2
NF3336_low_2
[»] chr4 (24 HSPs)
chr4 (157-432)||(7141084-7141359)
chr4 (440-528)||(7141394-7141482)
chr4 (39-99)||(7140982-7141042)
chr4 (157-272)||(25687028-25687144)
chr4 (205-271)||(30653280-30653347)
chr4 (157-272)||(55001685-55001801)
chr4 (162-272)||(54683639-54683750)
chr4 (161-272)||(6238230-6238342)
chr4 (158-254)||(21234552-21234648)
chr4 (157-260)||(53431685-53431788)
chr4 (161-263)||(44448499-44448601)
chr4 (161-257)||(6287895-6287991)
chr4 (5-52)||(7140924-7140971)
chr4 (157-257)||(28778614-28778714)
chr4 (161-272)||(47633789-47633901)
chr4 (207-272)||(37498245-37498311)
chr4 (157-263)||(24152728-24152834)
chr4 (161-272)||(2943597-2943709)
chr4 (161-272)||(33984130-33984242)
chr4 (205-271)||(40674791-40674858)
chr4 (168-260)||(51941158-51941250)
chr4 (207-253)||(33433813-33433859)
chr4 (17-99)||(55494991-55495072)
chr4 (157-190)||(55495130-55495163)
[»] chr1 (13 HSPs)
chr1 (5-99)||(31656189-31656282)
chr1 (157-272)||(2459587-2459703)
chr1 (157-261)||(38058803-38058907)
chr1 (161-272)||(41865329-41865441)
chr1 (161-272)||(28955500-28955612)
chr1 (157-263)||(33076656-33076762)
chr1 (158-271)||(44277907-44278021)
chr1 (205-272)||(9423044-9423112)
chr1 (207-263)||(46742508-46742564)
chr1 (161-272)||(30358116-30358228)
chr1 (207-272)||(31657091-31657157)
chr1 (205-272)||(46315677-46315745)
chr1 (207-258)||(28343746-28343797)
[»] chr2 (12 HSPs)
chr2 (157-271)||(6432213-6432328)
chr2 (207-272)||(42097903-42097969)
chr2 (207-271)||(45376952-45377017)
chr2 (157-272)||(34245288-34245404)
chr2 (207-261)||(35422097-35422151)
chr2 (161-272)||(8875715-8875827)
chr2 (207-272)||(43568405-43568471)
chr2 (161-263)||(14958172-14958274)
chr2 (205-257)||(10361451-10361503)
chr2 (161-272)||(42519756-42519868)
chr2 (207-272)||(3147489-3147555)
chr2 (163-272)||(36936020-36936130)
[»] chr5 (15 HSPs)
chr5 (157-263)||(2890915-2891021)
chr5 (165-272)||(35766601-35766709)
chr5 (162-263)||(7157444-7157545)
chr5 (17-99)||(36959711-36959792)
chr5 (157-263)||(35638816-35638922)
chr5 (205-272)||(3703494-3703562)
chr5 (157-272)||(76456-76572)
chr5 (161-272)||(12953777-12953889)
chr5 (174-260)||(5102661-5102747)
chr5 (205-258)||(17645363-17645416)
chr5 (161-272)||(6789559-6789671)
chr5 (161-272)||(12939827-12939939)
chr5 (161-272)||(13359426-13359538)
chr5 (207-272)||(25881549-25881615)
chr5 (157-263)||(27812942-27813048)
[»] chr3 (23 HSPs)
chr3 (157-263)||(51760523-51760629)
chr3 (157-258)||(42293034-42293135)
chr3 (157-263)||(6124763-6124869)
chr3 (158-272)||(12764713-12764828)
chr3 (205-272)||(32999646-32999714)
chr3 (157-260)||(25999111-25999213)
chr3 (157-271)||(42527997-42528112)
chr3 (164-263)||(52959344-52959442)
chr3 (157-271)||(51980775-51980889)
chr3 (164-272)||(30317892-30318001)
chr3 (161-254)||(51062971-51063064)
chr3 (17-96)||(51980950-51981028)
chr3 (207-272)||(9558851-9558917)
chr3 (207-272)||(19274772-19274838)
chr3 (207-260)||(50197997-50198050)
chr3 (161-263)||(54463401-54463503)
chr3 (205-272)||(43968341-43968409)
chr3 (207-258)||(4070873-4070924)
chr3 (157-272)||(12122115-12122231)
chr3 (219-272)||(55226337-55226391)
chr3 (208-272)||(10809491-10809556)
chr3 (207-263)||(17666854-17666910)
chr3 (161-197)||(45355191-45355227)
[»] chr8 (14 HSPs)
chr8 (157-271)||(2773524-2773639)
chr8 (205-271)||(34903367-34903434)
chr8 (161-260)||(7303373-7303472)
chr8 (205-257)||(21266853-21266905)
chr8 (218-272)||(3512513-3512568)
chr8 (207-272)||(41355653-41355719)
chr8 (218-263)||(24804489-24804534)
chr8 (208-263)||(16785867-16785922)
chr8 (161-272)||(16786476-16786588)
chr8 (207-272)||(35057292-35057358)
chr8 (208-272)||(16785659-16785724)
chr8 (207-263)||(34618705-34618761)
chr8 (161-272)||(20697451-20697563)
chr8 (205-272)||(22215153-22215221)
[»] chr6 (3 HSPs)
chr6 (157-271)||(6833988-6834102)
chr6 (161-272)||(21459064-21459176)
chr6 (161-272)||(25023400-25023512)
[»] scaffold1391 (1 HSPs)
scaffold1391 (157-271)||(1437-1551)
[»] chr7 (16 HSPs)
chr7 (157-263)||(30523895-30524001)
chr7 (207-271)||(42997557-42997622)
chr7 (207-272)||(981379-981445)
chr7 (161-260)||(3370504-3370603)
chr7 (157-271)||(21920738-21920852)
chr7 (207-272)||(46534450-46534516)
chr7 (218-272)||(6476968-6477023)
chr7 (207-272)||(25696075-25696141)
chr7 (207-263)||(43158183-43158239)
chr7 (218-272)||(47479828-47479883)
chr7 (219-272)||(28235327-28235381)
chr7 (161-263)||(28958067-28958169)
chr7 (163-272)||(46615626-46615736)
chr7 (205-272)||(35669672-35669740)
chr7 (161-272)||(14792062-14792174)
chr7 (207-257)||(44103722-44103772)
[»] scaffold0007 (1 HSPs)
scaffold0007 (205-272)||(157604-157672)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 157 - 432
Target Start/End: Original strand, 7141084 - 7141359
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    ||||||||||||||||||||||||| ||||||||  || ||       |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7141084 ctatcagctataagttaaaaagctacttgaaatagcttctcaaaaaaagttataagctcgcgagaaaagcttgttaacaaacacatcacgttttcatcca 7141183  T
Q  257 acaagctataagctaannnnnnngtgttaccaaacacagcataagacaccgaaagtgtcatcagtcacgaatgcaacattaatttgtcgtcagaaatgac 356  Q
    |||||||||||||||        ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  7141184 acaagctataagctagcttttttgtgttaccaaacacagcctaagacaccgaaaatgtcatcagtcacaaatgcaacattaatttgtcgtcagaaatgac 7141283  T
Q  357 caaaaggccatttaaatgcatgtccaattcgttacaacattannnnnnncaaaactattaagttgagacaatagat 432  Q
     |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||    
T  7141284 aaaaaggccatttaaatgcatgtccaattcgttacaacattatttttttcaaaactattaagttgagaccatagat 7141359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 440 - 528
Target Start/End: Original strand, 7141394 - 7141482
Alignment:
Q  440 tctcatctgtaacatatatatctaataaaaatcacatttgaaacttctccaaaaatgctaaaattttaaaacggtctgatcacaaatat 528  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141394 tctcatctataacatatatatctaataaaaatcacatttgaaacttctccaaaaatgctaaaattttaaaacggtctgatcacaaatat 7141482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 7140982 - 7141042
Alignment:
Q  39 tattagagaaagatgaaaacaaaacgtgagggagtgggacggttactttgtctacagaagg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7140982 tattagagaaagatgaaaacaaaacgtgagggagtgggacggttactttgtctacaaaagg 7141042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 25687144 - 25687028
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||||| |||||||| ||||||||  |||||       | |||||||||  ||||||||||||||| |||||||||||||||||||| ||    
T  25687144 ctatcagctataagttcaaaagctacttgaaatagcttttcaaaaaacgctataagctcatgagaaaagcttgttaccaaacacatcacgttttcataca 25687045  T
Q  257 acaagc-tataagctaa 272  Q
    |||||| ||||||||||    
T  25687044 acaagcttataagctaa 25687028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 30653280 - 30653347
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagcta 271  Q
    |||||||||||| || |||||||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  30653280 gttataagctcgtgaaaaaagcttgttaccaaacacatcatgttttcatccaacaagcttataagcta 30653347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 157 - 272
Target Start/End: Original strand, 55001685 - 55001801
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    ||||||||||||||||||||||||||||||||||  |||||       | |||||||||  || |||||| ||||| |||||||| |||||||||||| |    
T  55001685 ctatcagctataagttaaaaagctatttgaaatagcttttcaaaaaacgctataagctcatgaaaaaagcctgttaccaaacacaccacgttttcatcta 55001784  T
Q  257 acaagc-tataagctaa 272  Q
    || ||| ||||||||||    
T  55001785 acgagcttataagctaa 55001801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 272
Target Start/End: Complemental strand, 54683750 - 54683639
Alignment:
Q  162 agctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaag 261  Q
    ||||||||| |||||||||| ||||| ||  |||||       |||||||||||  ||||||||||||||| ||||||| ||||||||||||||||| ||    
T  54683750 agctataagctaaaaagctacttgaattagcttttcaaaaaacgttataagctcatgagaaaagcttgttaccaaacacgtcacgttttcatccaacgag 54683651  T
Q  262 c-tataagctaa 272  Q
    | ||||||||||    
T  54683650 cttataagctaa 54683639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 6238342 - 6238230
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||  |||||       |||||||||||  || |||||||||||| ||||||| ||||||||||||| ||| |    
T  6238342 cagctataagctaaaaagctacttgaaatagcttttcaaaaaatgttataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacga 6238243  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  6238242 gcttataagctaa 6238230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 21234552 - 21234648
Alignment:
Q  158 tatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatc 254  Q
    ||||||||||||| |||||||||||||||||||  |||||       | |||||||||  || |||||||||||| ||||||||||||||| |||||    
T  21234552 tatcagctataagctaaaaagctatttgaaatagcttttcaaaaaacgctataagctcatgataaaagcttgttaccaaacacatcacgttctcatc 21234648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 53431788 - 53431685
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| |||||||||| ||||| ||  || ||       | |||||||||| |||||||| |||||| ||||||||||| |||||||||||    
T  53431788 ctatcagctataagctaaaaagctacttgaattagcttctcaagaaaagctataagctcgtgagaaaagtttgttaccaaacacatcatgttttcatcca 53431689  T
Q  257 acaa 260  Q
    ||||    
T  53431688 acaa 53431685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 44448601 - 44448499
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||| |||||       |||||||||||  || |||||||||||| |||||||  |||||||||||| ||| |    
T  44448601 cagctataagctaaaaagctacttgaaataacttttcaaaaaacgttataagctcatgaaaaaagcttgttaccaaacacgccacgttttcatctaacga 44448502  T
Q  261 gct 263  Q
    |||    
T  44448501 gct 44448499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 6287991 - 6287895
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaa 257  Q
    |||||||||| | |||||||| ||||||||  |||||       |||||||||||  || ||||| |||||| ||||||||||||||||||||||||    
T  6287991 cagctataagctcaaaagctacttgaaatagcttttcaaaaaacgttataagctcatgaaaaaagtttgttaccaaacacatcacgttttcatccaa 6287895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 7140924 - 7140971
Alignment:
Q  5 gagtgagatgaaagtgaatgaagcaataaaatagtattagagaaagat 52  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||||    
T  7140924 gagtgaaatgaaagtgaatgaagcaatgaaatagtattagaggaagat 7140971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 28778714 - 28778614
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    ||||||| |||||| |||||||||| ||||| ||  |||||       | |||| ||||| ||||||||||||||| ||||||| |||||||||||||||    
T  28778714 ctatcagttataagctaaaaagctacttgaattagcttttcaaaaaacgctatatgctcgtgagaaaagcttgttaccaaacacgtcacgttttcatcca 28778615  T
Q  257 a 257  Q
    |    
T  28778614 a 28778614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 47633789 - 47633901
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||  |||||       ||||||| |||  || |||||||||||| ||||||| ||||||||||||| ||| |    
T  47633789 cagctataagctaaaaagctacttgaaatagcttttcaaaaaacgttataaactcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacga 47633888  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  47633889 gcttataagctaa 47633901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 37498311 - 37498245
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||  |||||||| |||||| ||||||| ||||||||||||||||| ||| ||||||||||    
T  37498311 tataagctcatgagaaaagtttgttaccaaacacgtcacgttttcatccaacgagcttataagctaa 37498245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 24152834 - 24152728
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    ||||||||||||||  ||||||||| ||||||||  |||||       | ||||||||   ||||||| ||| ||| |||||||||||||||||||||||    
T  24152834 ctatcagctataagcaaaaaagctacttgaaatagcttttcaaaaaacgctataagcttatgagaaaaacttattaccaaacacatcacgttttcatcca 24152735  T
Q  257 acaagct 263  Q
    || ||||    
T  24152734 actagct 24152728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 2943597 - 2943709
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||| |||||| |||||  |||||       | |||||||||  || |||||||||||| ||||||| ||||||||||||| ||| |    
T  2943597 cagctataagctaaaaaactatttaaaatagcttttcaaaaaatgctataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacga 2943696  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  2943697 gcttataagctaa 2943709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 33984242 - 33984130
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||  |||||         |||||||||  || |||||||||||| ||||||| ||||||||||||| ||| |    
T  33984242 cagctataagctaaaaagctacttgaaatagcttttcaaaaaacactataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacga 33984143  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  33984142 gcttataagctaa 33984130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 40674858 - 40674791
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagcta 271  Q
    |||||||| ||| || |||||||| ||| ||||||||||| |||||||||||| |||| |||||||||    
T  40674858 gttataagatcgtgaaaaaagcttattaccaaacacatcatgttttcatccaataagcttataagcta 40674791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 51941250 - 51941158
Alignment:
Q  168 aagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    ||||| |||||||| |||||||| ||||||       |||||||||||  ||||||| ||||||| |||||| |||| ||||| |||||||||    
T  51941250 aagttcaaaagctacttgaaatagtttttcacaaaaagttataagctcatgagaaaaacttgttaccaaacatatcatgttttgatccaacaa 51941158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 33433859 - 33433813
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcat 253  Q
    ||||| |||| ||||||| ||||||||||||||| ||||||||||||    
T  33433859 tataatctcgtgagaaaaacttgttatcaaacacgtcacgttttcat 33433813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 55494991 - 55495072
Alignment:
Q  17 agtgaatgaagcaataaaatagtattagagaaagatgaaaacaaaacgtgagggagtgggacggttactttgtctacagaagg 99  Q
    |||| |||||||||| |||||||||  ||||| ||  ||||||||||||||| |||||||||||||  ||||| |||| ||||    
T  55494991 agtggatgaagcaatgaaatagtatctgagaa-gagaaaaacaaaacgtgagtgagtgggacggttgatttgtttacataagg 55495072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 55495130 - 55495163
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaata 190  Q
    ||||||||||||||||||||||||| ||||||||    
T  55495130 ctatcagctataagttaaaaagctacttgaaata 55495163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 31656189 - 31656282
Alignment:
Q  5 gagtgagatgaaagtgaatgaagcaataaaatagtattagagaaagatgaaaacaaaacgtgagggagtgggacggttactttgtctacagaagg 99  Q
    |||||| |||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31656189 gagtgaaatgatagtgaatgaagcaatgaaatagtatcagagaa-gatgaaaacaaaacgtgagggagttggacggttactttgtctacagaagg 31656282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 272
Target Start/End: Original strand, 2459587 - 2459703
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| |||||||||| ||||||||  || ||       | |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  2459587 ctatcagctataagctaaaaagctacttgaaatagcttctcaaaaaaagatataagctcgtgagaaaagcttgttaccaaacacatcacgttttcatcca 2459686  T
Q  257 acaagc-tataagctaa 272  Q
    | |||| ||||||||||    
T  2459687 ataagcttataagctaa 2459703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 38058907 - 38058803
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| |||||||||||||||||||  || ||       | |||||||||| ||||||||||||||| ||||||||||||||||||| |||    
T  38058907 ctatcagctataagctaaaaagctatttgaaatagcttctcaaaaaaagctataagctcgtgagaaaagcttgttaccaaacacatcacgttttcaacca 38058808  T
Q  257 acaag 261  Q
    |||||    
T  38058807 acaag 38058803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 41865441 - 41865329
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| | |||||||| ||||||||  |||||       |||||||||||  |||||||||| |||| |||||||||||||||||||||||||||    
T  41865441 cagctataagctcaaaagctacttgaaatagcttttcaaaaaacgttataagctcatgagaaaagctcgttaccaaacacatcacgttttcatccaacaa 41865342  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  41865341 gcttataagctaa 41865329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 28955500 - 28955612
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||  |||||       |||||||||||  || |||||||||||| ||||||||||||||||||||| ||| |    
T  28955500 cagctataagctaaaaagctacttgaaatagcttttcaaaaaatgttataagctcatgaaaaaagcttgttaccaaacacatcacgttttcatctaacga 28955599  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  28955600 gcttataagctaa 28955612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 33076762 - 33076656
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| |||||||||| ||||| ||  |||||       |||||||||||  ||||||||||||||| ||||||| |||| ||||||||||    
T  33076762 ctatcagctataagctaaaaagctacttgaattagcttttcaaaaaatgttataagctcatgagaaaagcttgttaccaaacacgtcacattttcatcca 33076663  T
Q  257 acaagct 263  Q
    || ||||    
T  33076662 acgagct 33076656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 44277907 - 44278021
Alignment:
Q  158 tatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaa 257  Q
    ||||||||||||| |||||||||| ||||||||  ||||        |  ||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  44277907 tatcagctataagctaaaaagctacttgaaatagctttttaaaaaacgcaataagctcatgagaaaagcttgttaccaaacacatcacgttttcatccaa 44278006  T
Q  258 caagc-tataagcta 271  Q
    | ||| |||||||||    
T  44278007 ctagcttataagcta 44278021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 9423044 - 9423112
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    ||||||||||| | |||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||    
T  9423044 gttataagctcacaagaaaagcttgttaccaaacacatcacattttgatccaacaagcttataagctaa 9423112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 46742564 - 46742508
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagct 263  Q
    |||||||||  ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  46742564 tataagctcatgagaaaagcttgttaccaaacgcatcatgttttcatccaacaagct 46742508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 30358228 - 30358116
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||  |||||       |||||||||||  || |||||||||||| ||||||| |||||||||| || ||| |    
T  30358228 cagctataagctaaaaagctacttgaaatagcttttcaaaaaatgttataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcttctaacga 30358129  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  30358128 gcttataagctaa 30358116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 31657091 - 31657157
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||| || |||||||||||||  |||||||||||||||||||||| || ||| ||||||||||    
T  31657091 tataagcttgcaagaaaagcttgttgccaaacacatcacgttttcatccgacgagcttataagctaa 31657157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 46315677 - 46315745
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||||  || |||||||||||| ||||||| ||||||||||||| ||| ||| ||||||||||    
T  46315677 gttataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacgagcttataagctaa 46315745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 28343797 - 28343746
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaac 258  Q
    |||||||||  || |||| ||||||| |||||||||||||||||||||||||    
T  28343797 tataagctcatgaaaaaaacttgttaccaaacacatcacgttttcatccaac 28343746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 6432328 - 6432213
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| |||||||||| |||||||| ||||||       |||||||||||  ||||||||||||||| |||||||||||||||||||||||    
T  6432328 ctatcagctataagctaaaaagctacttgaaatagtttttcaaaaaacgttataagctcatgagaaaagcttgttaccaaacacatcacgttttcatcca 6432229  T
Q  257 acaagc-tataagcta 271  Q
    || ||| |||||||||    
T  6432228 actagcttataagcta 6432213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 42097903 - 42097969
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  42097903 tataagctcatgagaaaagcttgttaccaaacacatcacgttttcatccaataagcttataagctaa 42097969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 45377017 - 45376952
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagcta 271  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  45377017 tataagctcatgagaaaagcttgttaccaaacacatcacgttttcatccaactagcttataagcta 45376952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 34245404 - 34245288
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    ||||||||||||||||||||||||| ||||||||  |||||       | |||||||||  || |||||||||||| |||||| | |||||||||||| |    
T  34245404 ctatcagctataagttaaaaagctacttgaaatagcttttcaaaaaacgctataagctcatgaaaaaagcttgttaccaaacaaaccacgttttcatcta 34245305  T
Q  257 acaagc-tataagctaa 272  Q
    || ||| ||||||||||    
T  34245304 acgagcttataagctaa 34245288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 35422151 - 35422097
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaag 261  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||| ||||||||    
T  35422151 tataagctcatgagaaaagcttgttaccaaacacatcacgttttcaaccaacaag 35422097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 8875827 - 8875715
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||  |||||       | |||||||||  || |||||||||||| ||||||| ||||||||||||| ||| |    
T  8875827 cagctataagctaaaaagctacttgaaatagcttttcaaaaaacgctataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacga 8875728  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  8875727 gcttataagctaa 8875715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 43568471 - 43568405
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||  || |||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||    
T  43568471 tataagctcatgataaaagcttgttaccaaacacgtcacgttttcatccaacgagcttataagctaa 43568405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 14958274 - 14958172
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||  |||||       | |||||||||  || |||||||||||| ||||||| ||||||||||||| ||| |    
T  14958274 cagctataagctaaaaagctacttgaaatagcttttcaaaaaacgctataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacga 14958175  T
Q  261 gct 263  Q
    |||    
T  14958174 gct 14958172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 10361503 - 10361451
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaa 257  Q
    |||||||||||| || |||||||| ||| ||||||||||| ||||||||||||    
T  10361503 gttataagctcgtgaaaaaagcttattaccaaacacatcatgttttcatccaa 10361451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 42519868 - 42519756
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||| ||| ||||||||  |||||       | |||||||||  || |||||||||||| ||||||| ||||||||||||| ||| |    
T  42519868 cagctataagctaaaaaactacttgaaatagcttttcaaaaaacgctataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacga 42519769  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  42519768 gcttataagctaa 42519756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 3147555 - 3147489
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||  ||||||| ||||||| ||||||| |||| ||||||||||| |||| ||||||||||    
T  3147555 tataagctcatgagaaaaacttgttaccaaacacgtcacattttcatccaagaagcttataagctaa 3147489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 36936020 - 36936130
Alignment:
Q  163 gctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc 262  Q
    |||||||| |||||||||| ||||||||  |||||       | |||||||||   | |||||||||||| ||||||| ||||||||||||| ||| |||    
T  36936020 gctataagctaaaaagctacttgaaatagcttttcaaaaaacgctataagctcattaaaaaagcttgttaccaaacacgtcacgttttcatctaacgagc 36936119  T
Q  263 -tataagctaa 272  Q
     ||||||||||    
T  36936120 ttataagctaa 36936130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 2890915 - 2891021
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| ||||||||||||||||||| ||| ||       | |||||||||| |||||||| || |||||||||||||||| ||||||||||    
T  2890915 ctatcagctataagctaaaaagctatttgaaatagtttctcaaaaaaagctataagctcgtgagaaaagtttattatcaaacacatcacattttcatcca 2891014  T
Q  257 acaagct 263  Q
    |||||||    
T  2891015 acaagct 2891021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 35766709 - 35766601
Alignment:
Q  165 tataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-t 263  Q
    |||||||| |||||||| |||||||| ||||||       | |||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |    
T  35766709 tataagttcaaaagctacttgaaatagtttttcaaaaaatgctataagctcatgagaaaagcttgttaccaaacacatcacgttttcatccaacaagctt 35766610  T
Q  264 ataagctaa 272  Q
    |||||||||    
T  35766609 ataagctaa 35766601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 7157444 - 7157545
Alignment:
Q  162 agctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaag 261  Q
    ||||||||||| |||||||||||||||||  || ||       | |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  7157444 agctataagtttaaaagctatttgaaatagcttctcaaaaaaagctataagctcgtgagaaaagcttgttaccaaacgcatcacgttttcatccaacaag 7157543  T
Q  262 ct 263  Q
    ||    
T  7157544 ct 7157545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 36959792 - 36959711
Alignment:
Q  17 agtgaatgaagcaataaaatagtattagagaaagatgaaaacaaaacgtgagggagtgggacggttactttgtctacagaagg 99  Q
    |||| |||||||||| ||||||||  |||||| || |||||||||||||||| ||||||||||||| |||||| |||||||||    
T  36959792 agtggatgaagcaatgaaatagtaccagagaa-gaggaaaacaaaacgtgagtgagtgggacggttgctttgtttacagaagg 36959711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 35638922 - 35638816
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| |||||| ||||||||||||| |||||       | |||||||||| || ||||||||||||||||||||  ||| |||||||| |    
T  35638922 ctatcagctataagctaaaaaactatttgaaataacttttcaaaaaacgctataagctcgtgaaaaaagcttgttatcaaacacgccacattttcatcta 35638823  T
Q  257 acaagct 263  Q
    || ||||    
T  35638822 acgagct 35638816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 3703562 - 3703494
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||||  ||||||| ||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  3703562 gttataagctcatgagaaaaacttgttatcaaacacgtcacgttttcatccaataagcttataagctaa 3703494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 76572 - 76456
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| |||||||||| ||||||||  |||||       | |||||||||| || |||||||||||| |||||||  |||||||||||| |    
T  76572 ctatcagctataagctaaaaagctacttgaaatagcttttcaaaaaacgctataagctcgggaaaaaagcttgttaccaaacacgccacgttttcatcta 76473  T
Q  257 acaagc-tataagctaa 272  Q
    || ||| ||||||||||    
T  76472 acgagcttataagctaa 76456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 12953777 - 12953889
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||||||||||||  |||||       | |||||||||  || ||||||||||||||||||||  |||||||||||| ||| |    
T  12953777 cagctataagctaaaaagctatttgaaatagcttttcaaaaaacgctataagctcatgaaaaaagcttgttatcaaacacgccacgttttcatctaacga 12953876  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  12953877 gcttataagctaa 12953889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 5102661 - 5102747
Alignment:
Q  174 aaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    ||||| ||||||||||| ||||||       |||||||||||  |||||||| |||||||||||||||||| ||||| |||||||||    
T  5102661 aaaagttatttgaaatagtttttcacaaaaagttataagctcatgagaaaagtttgttatcaaacacatcatgttttgatccaacaa 5102747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 17645416 - 17645363
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaac 258  Q
    |||||||||||  ||||||||||||||| ||||||| |||||||||||||||||    
T  17645416 gttataagctcatgagaaaagcttgttaccaaacacgtcacgttttcatccaac 17645363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 6789559 - 6789671
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||  |||||       | |||||||||  || |||||||||||| ||||||| ||||||||||||| ||| |    
T  6789559 cagctataagctaaaaagctacttgaaatagcttttcaaaaaacgctataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacga 6789658  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  6789659 gcttataagctaa 6789671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 12939827 - 12939939
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    ||||||||||||||||||||||||||||||  |||||       | |||||||||  || |||| |||||||||||||||  || ||||||||| ||| |    
T  12939827 cagctataagttaaaaagctatttgaaatagcttttcaaaaaacgctataagctcatgaaaaaaacttgttatcaaacacgccaggttttcatctaacga 12939926  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  12939927 gcttataagctaa 12939939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 13359426 - 13359538
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| ||||||| || ||||||||  |||||       | |||||||||  || |||||||||||| ||||||| ||||||||||||| |||||    
T  13359426 cagctataagctaaaaagttacttgaaatagcttttcaaaaaacgctataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacaa 13359525  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  13359526 gcttataagctaa 13359538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 25881615 - 25881549
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||  |||||||| |||||| ||||||| ||||||||||||||||| ||| ||||||||||    
T  25881615 tataagctcatgagaaaagtttgttaccaaacacgtcacgttttcatccaacgagcttataagctaa 25881549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 27812942 - 27813048
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| ||||||| || ||||||||  |||||       | |||||||||  || |||||||||||| ||||||| ||||||||||||| |    
T  27812942 ctatcagctataagctaaaaagttacttgaaatagcttttcaaaaaatgctataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatcta 27813041  T
Q  257 acaagct 263  Q
    || ||||    
T  27813042 acgagct 27813048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 51760629 - 51760523
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| ||||| |||| |||||| || |||||       | |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  51760629 ctatcagctataagctaaaatgctacttgaaaaaacttttcaaaaaaagctataagctcgtgagaaaagcttgttaccaaacacatcacgttttcatcca 51760530  T
Q  257 acaagct 263  Q
    |||||||    
T  51760529 acaagct 51760523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 157 - 258
Target Start/End: Complemental strand, 42293135 - 42293034
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||||||||||| || ||||||||| || ||       | |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  42293135 ctatcagctataagttaaaaagttacttgaaataacttctcaaaaaaagctataagctcgtgagaaaagcttgttaccaaacacatcacgttttcatcca 42293036  T
Q  257 ac 258  Q
    ||    
T  42293035 ac 42293034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 6124869 - 6124763
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| ||||||||||||||||||||||| |          |||||||||| |||||||| |||||| ||||||||||||||||||||| |    
T  6124869 ctatcagctataagctaaaaagctatttgaaataatttcttaaaaaaaactataagctcgtgagaaaagtttgttaccaaacacatcacgttttcatcaa 6124770  T
Q  257 acaagct 263  Q
    |||||||    
T  6124769 acaagct 6124763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 272
Target Start/End: Complemental strand, 12764828 - 12764713
Alignment:
Q  158 tatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaa 257  Q
    ||||||||||||| | |||||||| ||||||||  |||||       | |||||||||  ||||||||||||||| |||||||||||||||||||||||     
T  12764828 tatcagctataagctcaaaagctacttgaaatagcttttcaaaaatcgctataagctcatgagaaaagcttgttaccaaacacatcacgttttcatccag 12764729  T
Q  258 caagc-tataagctaa 272  Q
    ||||| ||||||||||    
T  12764728 caagcttataagctaa 12764713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 32999646 - 32999714
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||||  |||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  32999646 gttataagctcatgagaaaagctcgttaccaaacacatcacgttttcatccaacaagcttataagctaa 32999714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 25999111 - 25999213
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||||||||||| || ||||||||  || ||       | |||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  25999111 ctatcagctataagttaaaaaggtacttgaaatagcttctcaaaaaaagctataagctcgtgagaaaagcttgttc-caaacacatcacgttttcatcca 25999209  T
Q  257 acaa 260  Q
    ||||    
T  25999210 acaa 25999213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 42527997 - 42528112
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| |||||||||| ||||||||  || |        | ||| |||||| ||||||| ||||||| |||||||||||||||||||||||    
T  42527997 ctatcagctataagctaaaaagctacttgaaatagcttcttaataaaagctatgagctcgtgagaaaaacttgttaccaaacacatcacgttttcatcca 42528096  T
Q  257 acaagc-tataagcta 271  Q
    |||||| |||||||||    
T  42528097 acaagcttataagcta 42528112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 52959442 - 52959344
Alignment:
Q  164 ctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagct 263  Q
    |||||||||||||||||| |||||||| ||||||       |||||||||||  || |||||||||||| ||||||| ||||||||||||||||| ||||    
T  52959442 ctataagttaaaaagctacttgaaatagtttttcataaaaagttataagctcatga-aaaagcttgttaccaaacacgtcacgttttcatccaacgagct 52959344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 51980889 - 51980775
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    ||||||||||||||||||||||||| ||||||||  || |        | |||||||||| || ||||||| |||| ||||||||||| |||||||||||    
T  51980889 ctatcagctataagttaaaaagctacttgaaatagcttct-gaaaaaagctataagctcgtgaaaaaagctcgttaccaaacacatcatgttttcatcca 51980791  T
Q  257 acaagc-tataagcta 271  Q
    |||||| |||||||||    
T  51980790 acaagcttataagcta 51980775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 30317892 - 30318001
Alignment:
Q  164 ctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc- 262  Q
    |||||||||||||||||| ||||||||  |||||       | |||||||||  || |||| ||||||||||||||| ||||||||||||| ||| |||     
T  30317892 ctataagttaaaaagctacttgaaatagattttcaaaaaacgctataagctcatgaaaaaatcttgttatcaaacacgtcacgttttcatctaacgagct 30317991  T
Q  263 tataagctaa 272  Q
    ||||||||||    
T  30317992 tataagctaa 30318001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 51063064 - 51062971
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatc 254  Q
    |||||||||  |||||||||||||||||||  |||||       | |||||||||  || |||||||||||||||||||| |||||||||||||    
T  51063064 cagctataaactaaaaagctatttgaaatagcttttcagaaaacgctataagctcatgaaaaaagcttgttatcaaacacgtcacgttttcatc 51062971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 51981028 - 51980950
Alignment:
Q  17 agtgaatgaagcaataaaatagtattagagaaagatgaaaacaaaacgtgagggagtgggacggttactttgtctacaga 96  Q
    |||| |||||||||| ||||||||| |||||| ||  ||||||||||||||| |||||||||||||  ||||| ||||||    
T  51981028 agtggatgaagcaatgaaatagtatcagagaa-gagaaaaacaaaacgtgagtgagtgggacggttggtttgtttacaga 51980950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 9558851 - 9558917
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||  ||||||||||||||| ||||||| |||||||||| |||||| ||| ||||||||||    
T  9558851 tataagctcatgagaaaagcttgttaccaaacacgtcacgttttcttccaacgagcttataagctaa 9558917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 19274838 - 19274772
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    ||||| |||| ||||||||||||||| ||||||| |||| |||||||||||| ||| ||||||||||    
T  19274838 tataacctcgtgagaaaagcttgttaccaaacacgtcacattttcatccaacgagcttataagctaa 19274772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 50197997 - 50198050
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||  ||||||| |||||||  ||||||||||||||||||||||||||    
T  50197997 tataagctcatgagaaaaacttgttactaaacacatcacgttttcatccaacaa 50198050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 54463401 - 54463503
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||  |||||       | |||||||||  || |||||||||||| ||||||| ||||||||||||| ||| |    
T  54463401 cagctataagctaaaaagctacttgaaatagcttttcaaaaaacgctataagctcatgaaaaaagcttgttaccaaacacgtcacgttttcatctaacga 54463500  T
Q  261 gct 263  Q
    |||    
T  54463501 gct 54463503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 43968341 - 43968409
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||||  ||||||| ||||||| ||||||| ||| ||||| ||||||||||| ||||||||||    
T  43968341 gttataagctcatgagaaaaacttgttaccaaacacgtcatgttttgatccaacaagcttataagctaa 43968409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 4070924 - 4070873
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaac 258  Q
    ||||| |||| |||||||| || ||| |||||||||||||||||||||||||    
T  4070924 tataaactcgtgagaaaagtttattaccaaacacatcacgttttcatccaac 4070873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 272
Target Start/End: Original strand, 12122115 - 12122231
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||| ||||||||||| |||||||| ||||||||  || ||       | ||||||||| ||| |||||||||||| ||||||| |||| |||| || ||    
T  12122115 ctataagctataagtttaaaagctacttgaaatagcttctcaaaaaaagctataagctcacgaaaaaagcttgttaccaaacacgtcacattttgataca 12122214  T
Q  257 acaagc-tataagctaa 272  Q
    |||||| ||||||||||    
T  12122215 acaagcttataagctaa 12122231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 55226391 - 55226337
Alignment:
Q  219 agaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    ||||||||||||||||||| |  ||||||||||||||||| ||| ||||||||||    
T  55226391 agaaaagcttgttatcaaatatgtcacgttttcatccaacgagcttataagctaa 55226337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 10809491 - 10809556
Alignment:
Q  208 ataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    ||||||||  ||||||| ||| ||||||||||| ||| ||||| ||||||||||| ||||||||||    
T  10809491 ataagctcatgagaaaaacttattatcaaacacgtcatgttttgatccaacaagcttataagctaa 10809556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 17666910 - 17666854
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagct 263  Q
    |||||||||  || ||||| |||||| ||||||| ||||||||||||||||| ||||    
T  17666910 tataagctcatgaaaaaagtttgttaccaaacacgtcacgttttcatccaacgagct 17666854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 45355227 - 45355191
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttc 197  Q
    |||||||||| |||||||||| |||||||||||||||    
T  45355227 cagctataagctaaaaagctacttgaaataatttttc 45355191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 2773524 - 2773639
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| |||||||||| ||||||||  || ||       |||||||||||| ||||||||||||||| ||| ||| |||||||||||||||    
T  2773524 ctatcagctataagctaaaaagctacttgaaatagcttctcaaaaaaagttataagctcgtgagaaaagcttgttaccaagcacgtcacgttttcatcca 2773623  T
Q  257 acaagc-tataagcta 271  Q
    |||||| |||||||||    
T  2773624 acaagcttataagcta 2773639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 34903367 - 34903434
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagcta 271  Q
    |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  34903367 gttataagctcgtgagaaaagcttgttatccaacacatcatgttttcatccaacaagcttataagcta 34903434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 7303472 - 7303373
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| | ||||||||||||||||| ||||||       |||||||||||  |||||||||||| || |||||||||||| ||||||||||||||    
T  7303472 cagctataagctcaaaagctatttgaaatagtttttcaaaaaacgttataagctcatgagaaaagcttggtaccaaacacatcacattttcatccaacaa 7303373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 21266853 - 21266905
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaa 257  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  21266853 gttataagctcgtgagaaaagcttgttaccaaacacgtcacgttttcatccaa 21266905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 3512568 - 3512513
Alignment:
Q  218 gagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  3512568 gagaaaaacttgttaccaaacacatcacgttttcatccaacaagcttataagctaa 3512513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 41355719 - 41355653
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||  |||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||    
T  41355719 tataagctcatgagaaaagtttgttaccaaacacatcacgttttcatccaacaaacttataagctaa 41355653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 24804489 - 24804534
Alignment:
Q  218 gagaaaagcttgttatcaaacacatcacgttttcatccaacaagct 263  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||    
T  24804489 gagaaaagcttgttaccaaacacatcacattttcatccaacaagct 24804534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 16785922 - 16785867
Alignment:
Q  208 ataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagct 263  Q
    ||||||||  ||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  16785922 ataagctcatgagaaaagcttgttaccaaacacgtcacgttttcatccaacgagct 16785867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 16786476 - 16786588
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| | |||||||| ||||||||  |||||       | |||||||||   ||||||| |||||| |||||||||||||||||||| ||||||    
T  16786476 cagctataagctcaaaagctagttgaaatagcttttcaaaaaacgctataagctcataagaaaagtttgttaccaaacacatcacgttttcattcaacaa 16786575  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  16786576 gcttataagctaa 16786588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 35057292 - 35057358
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||  ||||||||||||||| ||||||| |||||||| |||||||| ||| ||||||||||    
T  35057292 tataagctcatgagaaaagcttgttaccaaacacgtcacgtttgcatccaacgagcttataagctaa 35057358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 16785724 - 16785659
Alignment:
Q  208 ataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    ||||||||  || |||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||    
T  16785724 ataagctcatgataaaagcttgttaccaaacacgtcacgttttcatccaacgagcttataagctaa 16785659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 34618705 - 34618761
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagct 263  Q
    |||||||||  |||||||||||||||| |||||| |||| |||||||||||| ||||    
T  34618705 tataagctcatgagaaaagcttgttattaaacacgtcacattttcatccaacgagct 34618761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 20697451 - 20697563
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||  |||||       |||||||||||  || |||||||||||| ||||||| | | ||||||||| ||| |    
T  20697451 cagctataagctaaaaagctacttgaaatagcttttcaaaaaacgttataagctcatgaaaaaagcttgttaccaaacacgttatgttttcatctaacga 20697550  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  20697551 gcttataagctaa 20697563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 22215221 - 22215153
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||||  || |||||||||||| |||||||  |||||||||||| ||| ||| ||||||||||    
T  22215221 gttataagctcatgaaaaaagcttgttaccaaacacgccacgttttcatctaacgagcttataagctaa 22215153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 6833988 - 6834102
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    ||||||||||||||||||||||||| ||||||||  || ||       |||||||||||  |||||||| |||||| |||||||||||||||||||||||    
T  6833988 ctatcagctataagttaaaaagctacttgaaatagcttctcaaaaaa-gttataagctcatgagaaaagtttgttaccaaacacatcacgttttcatcca 6834086  T
Q  257 acaagc-tataagcta 271  Q
    |||||| |||||||||    
T  6834087 acaagcttataagcta 6834102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 21459176 - 21459064
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| ||||||| || ||||| ||| |||||       | |||||||||   |||||||||||||||||||||| ||||||||||||||||| |    
T  21459176 cagctataagctaaaaagttacttgaattaacttttcaaaaaacgctataagctcataagaaaagcttgttatcaaacacgtcacgttttcatccaacga 21459077  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  21459076 gcttataagctaa 21459064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 25023400 - 25023512
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||| ||| ||||||||  |||||       | |||||||||  || |||||||||||| |||||||  |||||||||||| |||||    
T  25023400 cagctataagctaaaaaactacttgaaatagcttttcaaaaaacgctataagctcatgaaaaaagcttgttaccaaacacgccacgttttcatctaacaa 25023499  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  25023500 gcttataagctaa 25023512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1391 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold1391
Description:

Target: scaffold1391; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 1437 - 1551
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| |||||||||| ||||||||  || ||       |||||||||||  |||||||| |||||| |||||||||||||||||||||||    
T  1437 ctatcagctataagataaaaagctacttgaaatagcttctcaaaaaa-gttataagctcatgagaaaagtttgttaccaaacacatcacgttttcatcca 1535  T
Q  257 acaagc-tataagcta 271  Q
    |||||| |||||||||    
T  1536 acaagcttataagcta 1551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 30523895 - 30524001
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| ||||||||||  |||||||| || ||        ||||||||||| ||||||| ||||||| || ||||||||||||||||||||    
T  30523895 ctatcagctataagctaaaaagctacatgaaataacttctcaaaaaaaattataagctcgtgagaaaaacttgttaccatacacatcacgttttcatcca 30523994  T
Q  257 acaagct 263  Q
    |||||||    
T  30523995 acaagct 30524001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 42997622 - 42997557
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagcta 271  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  42997622 tataagctcgtgagaaaagcttgttaccaaacacatcacgttttcatccaacgagcttataagcta 42997557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 981445 - 981379
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||| || ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  981445 tataagctcgtgaaaaaagcttgttatcaaacacatcacgttttcattcaactagcttataagctaa 981379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 3370603 - 3370504
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| | |||||||| ||||||||  |||||       | |||||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  3370603 cagctataagctcaaaagctacttgaaatagcttttcaaaaaatgctataagctcatgagaaaagcttgttaccaaacacatcacgttttcatccaacaa 3370504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 21920738 - 21920852
Alignment:
Q  157 ctatcagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatcca 256  Q
    |||||||||||||| |||||||||| |||||||| |||||        | |||||||||  ||||||||||||||| |||||||||||||||||||| ||    
T  21920738 ctatcagctataagctaaaaagctacttgaaatagttttt-aaaaaacgctataagctcatgagaaaagcttgttaccaaacacatcacgttttcattca 21920836  T
Q  257 acaagc-tataagcta 271  Q
    || ||| |||||||||    
T  21920837 actagcttataagcta 21920852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 46534516 - 46534450
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||| |||||||| |||||| || |||||||||||||||||||||||||| ||||||||||    
T  46534516 tataagctcgtgagaaaagtttgttaccatacacatcacgttttcatccaacaagcttataagctaa 46534450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 6477023 - 6476968
Alignment:
Q  218 gagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  6477023 gagaaaaacttgttaccaaacacatcacgttttcatccaacaagcttataagctaa 6476968  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 25696141 - 25696075
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||  ||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||    
T  25696141 tataagctcatgagaaaagcttgttaccaaacacgtcacgttttcatccaacgagcttataagctaa 25696075  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 43158183 - 43158239
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagct 263  Q
    ||||| |||| ||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  43158183 tataaactcgtgagaaaagcttcttaccaaacacatcacgttttcatccaacgagct 43158239  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 47479883 - 47479828
Alignment:
Q  218 gagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    ||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||    
T  47479883 gagaaaagcttgttaccaaacacgtcacgttttcatccaacgagcttataagctaa 47479828  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 28235381 - 28235327
Alignment:
Q  219 agaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    |||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||    
T  28235381 agaaaagcttgttaccaaacacgtcacgttttcatccaacgagcttataagctaa 28235327  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 28958067 - 28958169
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||| |||||||||| ||||||||  |||||       |||||||||||  || |||||||||||| |||||||  |||||||||||| ||| |    
T  28958067 cagctataagctaaaaagctacttgaaatagcttttcaaaaaacgttataagctcatgaaaaaagcttgttaccaaacacgccacgttttcatctaacga 28958166  T
Q  261 gct 263  Q
    |||    
T  28958167 gct 28958169  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 46615626 - 46615736
Alignment:
Q  163 gctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc 262  Q
    ||||||||||||||||||| ||||||||  |||||       |||||||||||  || |||||||||||| |||||||   ||||||||||| ||| |||    
T  46615626 gctataagttaaaaagctacttgaaatagcttttcaaaaaacgttataagctcatgaaaaaagcttgttaccaaacacgctacgttttcatctaacgagc 46615725  T
Q  263 -tataagctaa 272  Q
     ||||||||||    
T  46615726 ttataagctaa 46615736  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 35669672 - 35669740
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    ||||||||||| ||||||||| |||||| ||||||| |||| |||| || |||||||| ||||||||||    
T  35669672 gttataagctcacgagaaaagtttgttagcaaacacgtcacattttgatacaacaagcttataagctaa 35669740  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 14792062 - 14792174
Alignment:
Q  161 cagctataagttaaaaagctatttgaaataatttttcnnnnnnngttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaa 260  Q
    |||||||||||| |||||||| ||||||||  || ||       | |||||||||  || ||||| |||||| ||||||||||||||||| ||||||| |    
T  14792062 cagctataagttcaaaagctacttgaaatagcttctcacaaaaagctataagctcatgaaaaaagtttgttaccaaacacatcacgttttaatccaacga 14792161  T
Q  261 gc-tataagctaa 272  Q
    || ||||||||||    
T  14792162 gcttataagctaa 14792174  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 44103772 - 44103722
Alignment:
Q  207 tataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaa 257  Q
    |||||||||| || ||||  ||||||||||||||||||| |||||||||||    
T  44103772 tataagctcgtgaaaaaaatttgttatcaaacacatcacattttcatccaa 44103722  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 157604 - 157672
Alignment:
Q  205 gttataagctcgcgagaaaagcttgttatcaaacacatcacgttttcatccaacaagc-tataagctaa 272  Q
    ||||||| |||  ||||||||||| ||| ||||||| |||| |||||||||||| ||| ||||||||||    
T  157604 gttataaactcatgagaaaagctttttaccaaacacgtcacattttcatccaacgagcttataagctaa 157672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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