View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3336_low_4 (Length: 433)
Name: NF3336_low_4
Description: NF3336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3336_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 32868156 - 32867751
Alignment:
| Q |
16 |
gtttaaatctcagacacctaacatctccacatttaaaacatgtgaacttcagccactaagtcacttgacnnnnnnntgtacattttgtataaaaactatt |
115 |
Q |
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| T |
32868156 |
gtttaaatctcggacacctaacatctccacatttaaaacatgtgagcttcagctactaggtcacttgacaaaaaaatgtacattttatataaaa-ctatt |
32868058 |
T |
|
| Q |
116 |
aataaaatatcatttgtgtatagatttatacaatattgatttcttatcatacaagacaaattagtatcatcaattaggg--ttatgtttgnnnnnnnnnn |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32868057 |
aataaaatatcatttgtgtatagatttatacaatattgattttttatcatacaagacaaattagtatcatcaattagggggttatgtttgaaaaaataaa |
32867958 |
T |
|
| Q |
214 |
nnnttaacacagataatgatcgtgtttagttagtgacagatggagtaaacaatagatagacaaataaatcattcttcattagttatagataaattaatac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32867957 |
aaattaacacagataatgatcgtgtttagttagtgacagatggagtaaacaatagatagacaaataaatcattcttcattagttatagataaattaatac |
32867858 |
T |
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| Q |
314 |
tggtttacacacaagtttaatttgtaagtacatcacttcaaggaag--nnnnnnnnttgtaaatacatggacataattggtagcttgcactgcagttggt |
411 |
Q |
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| T |
32867857 |
tggtttacacacaagtttaatttgtaagtacatcacttcaaggaagaaaaaaaaaattgtaaatacatggacataattggtagcttgcactgcagttggt |
32867758 |
T |
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| Q |
412 |
ctaatat |
418 |
Q |
| |
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||||||| |
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| T |
32867757 |
ctaatat |
32867751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 29549144 - 29549184
Alignment:
| Q |
41 |
tccacatttaaaacatgtgaacttcagccactaagtcactt |
81 |
Q |
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| T |
29549144 |
tccacatttaaaatgtgtgaacttcagccactaagttactt |
29549184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 5658605 - 5658543
Alignment:
| Q |
21 |
aatctcagacacctaacatctccacatttaaaacatgtgaacttcagccactaagtcacttga |
83 |
Q |
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||||||||||||| || ||||||||||||||| |||||| ||||||||||||| | |||||| |
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| T |
5658605 |
aatctcagacaccacacttctccacatttaaaatatgtgagcttcagccactaaattacttga |
5658543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 15028990 - 15028956
Alignment:
| Q |
39 |
tctccacatttaaaacatgtgaacttcagccacta |
73 |
Q |
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| T |
15028990 |
tctccacatttaaaatatgtgaacttcagccacta |
15028956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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