View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3336_low_5 (Length: 340)
Name: NF3336_low_5
Description: NF3336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3336_low_5 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 340
Target Start/End: Complemental strand, 11905997 - 11905679
Alignment:
| Q |
21 |
ttcagacttttattcaaagaatttctaaaagaagctatatgtttcactttgctccaattggagcttttctttattccttggtgaaagctagaacctgaaa |
120 |
Q |
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| T |
11905997 |
ttcagacttttatttaaagaatttctaaaagaagctatatgtttcactttgctccaattggagcttttctttattccttggtgaaagctagaacctgaaa |
11905898 |
T |
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| Q |
121 |
acaaatacaaattttagttgattatcacataagatttaaacttgttatctgtgtatgcatggttgggcgtgccacataggttatgaatgtaatatggtaa |
220 |
Q |
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| T |
11905897 |
acaaatacaaattttagttgattatcacataagatttaaacgtgttatctgtgtatgcatgggt-ggcgtgccacatatgttatgaatgtaatatggtaa |
11905799 |
T |
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| Q |
221 |
acttacatgatttatcatcaatggtgctttggtgttccgagattaatggtagatgggtggtggtggagaagcataaatgtaaactggcggtggaggagac |
320 |
Q |
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| T |
11905798 |
acttacatgatttatcatcaatggtgctttggtgttccgagattaatggtagatgggtggtggtggagaagcataaacgtaaactgatggtggaggagac |
11905699 |
T |
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| Q |
321 |
tttactggtgggggaggact |
340 |
Q |
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| T |
11905698 |
tttactggtgggggaggact |
11905679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 89 - 340
Target Start/End: Complemental strand, 11892321 - 11892068
Alignment:
| Q |
89 |
ctttattccttggtgaaagctagaacctgaaaacaaatacaaattttagttgattatcacataagatttaaacttgttatctgtgtatgcatggttgggc |
188 |
Q |
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| T |
11892321 |
ctttattccttgatgaaaactagaacctgaaaacaaataagagtttttgttgattagtacataaaatttaaacatgtgatatgtgtgtgtatgggtggga |
11892222 |
T |
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| Q |
189 |
gt-gccacataggttatgaatgtaata-tggtaaacttacatgatttatcatcaatggtgctttggtgttccgagattaatggtagatgggtggtggtgg |
286 |
Q |
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| T |
11892221 |
aaagatgcaagtgttatgattgcaataatggtaaacttacataatttatcaccaatggtgatttggtgttgtgaggctagttgtagattggtggtggtgg |
11892122 |
T |
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| Q |
287 |
agaagcataaatgtaaactggcggtggaggagactttactggtgggggaggact |
340 |
Q |
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| T |
11892121 |
agaagcatagatgtaagctggtggtggaggtgactttactggtgggggaggact |
11892068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 52818289 - 52818357
Alignment:
| Q |
269 |
gtagatgggtggtggtggagaagcataaatgtaaactggcggtggaggagactttactggtgggggagg |
337 |
Q |
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| T |
52818289 |
gtagataggtggtggtggggaagcataaatgtaaactggcggaggaggtgatttcattggtgggggagg |
52818357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 11882946 - 11882882
Alignment:
| Q |
276 |
ggtggtggtggagaagcataaatgtaaactggcggtggaggagactttactggtgggggaggact |
340 |
Q |
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| T |
11882946 |
ggtggtggtggtgaagcatagatataagttggtggtggaggtgactttactggtgggggaggact |
11882882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 52818068 - 52818174
Alignment:
| Q |
21 |
ttcagacttttattcaaagaatttctaaaagaagctatatgtttcactttgctccaattggagcttttctttattccttggtgaaagctagaacctgaaa |
120 |
Q |
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||||||||||||||||||||| ||| | | |||| || ||||| ||||||| ||| | ||||| || ||||||||||| ||||| ||| |||||| || |
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| T |
52818068 |
ttcagacttttattcaaagaacttcgacaggaaggtaaatgttgcactttgttcccaatggaggttgcatttattccttgatgaaaactaaaacctggaa |
52818167 |
T |
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| Q |
121 |
acaaata |
127 |
Q |
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| T |
52818168 |
agaaata |
52818174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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