View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3336_low_6 (Length: 310)
Name: NF3336_low_6
Description: NF3336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3336_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 56 - 288
Target Start/End: Complemental strand, 48230727 - 48230492
Alignment:
| Q |
56 |
gacttaactaaatagtagaagaaagttgaccaaatacacattcagtatggccttgatgaagtaattaactgctagggccttaggtagcatgcggagagct |
155 |
Q |
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| T |
48230727 |
gacttaactaaatagtagaagaaagttgaccaaatacacattcagtatggccttgatgaagtgattaactgctagggccttaggtagcatgcggagagct |
48230628 |
T |
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| Q |
156 |
aagaagaatcaattatatatatacaggaacatagacaatctaaaaaagcacatacctgtgaaataaatgaatgagatttgaatcatatgaagcattattg |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230627 |
aagaagaatcaattatatatatacaggaacatagacaatctaaaaaagcacatacctgtgaaataaatgaatgagatttgaatcatatgaagcattattg |
48230528 |
T |
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| Q |
256 |
ccttaa---agtaatgaagtcacaagttgaaatcta |
288 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
48230527 |
ccttaaagtagtaatgaagtcacaagttgaaatcta |
48230492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 48230811 - 48230782
Alignment:
| Q |
1 |
taggtgtttccagataatttaattaattaa |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
48230811 |
taggtgtttccagataatttaattaattaa |
48230782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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