View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3336_low_7 (Length: 296)

Name: NF3336_low_7
Description: NF3336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3336_low_7
NF3336_low_7
[»] chr2 (10 HSPs)
chr2 (17-282)||(1210305-1210573)
chr2 (218-277)||(15911481-15911540)
chr2 (215-276)||(17304586-17304647)
chr2 (216-276)||(38707596-38707656)
chr2 (219-282)||(13278394-13278457)
chr2 (218-276)||(17138052-17138110)
chr2 (216-259)||(41961404-41961447)
chr2 (217-276)||(45116782-45116841)
chr2 (218-276)||(38207188-38207246)
chr2 (218-278)||(6402581-6402641)
[»] chr3 (9 HSPs)
chr3 (216-276)||(40936913-40936973)
chr3 (218-276)||(32529503-32529561)
chr3 (216-276)||(36403061-36403121)
chr3 (217-276)||(10509603-10509662)
chr3 (218-276)||(149025-149083)
chr3 (214-276)||(53814645-53814707)
chr3 (216-276)||(47646648-47646708)
chr3 (223-282)||(41194092-41194151)
chr3 (219-264)||(49440654-49440699)
[»] chr1 (10 HSPs)
chr1 (214-276)||(3517957-3518019)
chr1 (222-276)||(48965273-48965327)
chr1 (218-276)||(14587725-14587783)
chr1 (217-276)||(37951999-37952057)
chr1 (217-282)||(12700919-12700984)
chr1 (239-276)||(46597514-46597551)
chr1 (218-282)||(22858456-22858520)
chr1 (217-252)||(3475664-3475699)
chr1 (221-276)||(44496187-44496242)
chr1 (218-276)||(29961095-29961153)
[»] chr8 (6 HSPs)
chr8 (216-276)||(40105630-40105690)
chr8 (218-276)||(6346999-6347057)
chr8 (215-267)||(20091262-20091314)
chr8 (219-282)||(8240363-8240426)
chr8 (217-267)||(43098929-43098979)
chr8 (216-267)||(29544102-29544153)
[»] chr4 (14 HSPs)
chr4 (217-276)||(45029402-45029461)
chr4 (215-276)||(45228785-45228846)
chr4 (217-276)||(35158415-35158474)
chr4 (213-276)||(52417314-52417377)
chr4 (218-276)||(55136364-55136422)
chr4 (219-276)||(16023572-16023629)
chr4 (219-276)||(28781152-28781209)
chr4 (215-267)||(49374019-49374071)
chr4 (218-276)||(9036480-9036538)
chr4 (218-276)||(40727723-40727781)
chr4 (218-276)||(45924302-45924360)
chr4 (217-267)||(46439725-46439775)
chr4 (218-267)||(28311276-28311325)
chr4 (223-267)||(38551653-38551697)
[»] chr6 (3 HSPs)
chr6 (218-275)||(438743-438800)
chr6 (218-276)||(303452-303510)
chr6 (236-276)||(31271065-31271105)
[»] chr7 (6 HSPs)
chr7 (218-278)||(34848254-34848314)
chr7 (216-282)||(36312455-36312521)
chr7 (218-276)||(46254564-46254622)
chr7 (221-267)||(14817036-14817082)
chr7 (221-267)||(15264032-15264078)
chr7 (214-276)||(44862711-44862773)
[»] chr5 (12 HSPs)
chr5 (216-276)||(12723367-12723427)
chr5 (213-276)||(13654675-13654738)
chr5 (217-276)||(37012563-37012622)
chr5 (218-267)||(16513984-16514033)
chr5 (216-276)||(12784850-12784910)
chr5 (216-276)||(13822453-13822513)
chr5 (223-253)||(9715697-9715727)
chr5 (214-252)||(37030654-37030692)
chr5 (217-282)||(8197105-8197170)
chr5 (218-267)||(37883125-37883174)
chr5 (217-277)||(8734392-8734450)
chr5 (215-267)||(37094240-37094292)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 1210573 - 1210305
Alignment:
Q  17 aaattcaacataaagaaacatgtaaggtacactaagtagcaaaaacatgtgtgaagcttccttaattatagctgagcgagggtcaacaaagtcaaacttt 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1210573 aaattcaacgtaaagaaacatgtaaggtacactaagtagcaaaaacatgtgtgaagcttccttaattatagctgagcgagggtcaacaaagtcaaacttt 1210474  T
Q  117 cacattagaactccaactaccagtagtaactactggcattaatcaaatttgatctaaaggactctctagtagtagtacgaaaattcaacacatt---att 213  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||    
T  1210473 cacatgagaactccaactaccagtagtaactactggcattaatcaaatttgatctaaaggactctctagcagtagtacgaaaattcaacacattattatt 1210374  T
Q  214 aaaagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatatctctg 282  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||| |||||    
T  1210373 aaaagactattactttttccaccctgctgccttcttacgcaccctgtaaaatttattaaaatagctctg 1210305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 15911481 - 15911540
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatat 277  Q
    |||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||||    
T  15911481 gactattacttttcccaccctgctgccttctcgcgcaccctgcaaaatttactaaaatat 15911540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 17304586 - 17304647
Alignment:
Q  215 aaagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||| |||||| |||||||||    
T  17304586 aaagactattattttttccaccctgctgccttctcgcgcgccctgcaaaattaattaaaata 17304647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 38707656 - 38707596
Alignment:
Q  216 aagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||||  ||| ||||||||||||||||||||||| |||||||| |||||||    
T  38707656 aagactattacttttcccactctgctgccttctcgcgcaccctgaaaaatttactaaaata 38707596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 13278394 - 13278457
Alignment:
Q  219 actattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatatctctg 282  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||||||||  |||||| |||||    
T  13278394 actattactttttccaccctgctgtcttctcgcgcgccctgtaaaatttacaaaaatacctctg 13278457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 17138110 - 17138052
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||  ||||||||||||| ||||||| |||| ||||||||| |||||||    
T  17138110 gactattacttttcccaccctgctgcctcctcgcgcgccctataaaatttactaaaata 17138052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 41961404 - 41961447
Alignment:
Q  216 aagactattacttttttcaccctgctgccttctcgcgcaccctg 259  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||    
T  41961404 aagactattactttttccaccctgttgccttctcgcgcgccctg 41961447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 45116782 - 45116841
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||  |||| ||||| |||||||||| ||||| |||||||| |||||||    
T  45116782 agactattacttttcccaccatgctgtcttctcgcgcgccctgcaaaatttactaaaata 45116841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 38207188 - 38207246
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||| ||||  ||||||||||||| |||||||| |||| |||||||| |||||||    
T  38207188 gactattatttttcccaccctgctgcctcctcgcgcatcctgcaaaatttactaaaata 38207246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 6402581 - 6402641
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatatc 278  Q
    |||||||||||||  |||| |||  ||| ||||||||||||| |||||||| |||||||||    
T  6402581 gactattacttttcccaccatgcctcctcctcgcgcaccctgcaaaatttactaaaatatc 6402641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 40936913 - 40936973
Alignment:
Q  216 aagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  40936913 aagactattacttttcccaccctactgccttctcgcgcaccctgtaaaatttattaaaata 40936973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 32529503 - 32529561
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||| |||||||    
T  32529503 gactattactttttccaccctgctgccttctcgcgtgccctgtaaaatttactaaaata 32529561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 36403121 - 36403061
Alignment:
Q  216 aagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||| |||||||| |||||||    
T  36403121 aagactattacttttctcaccctgctgcctcctcgcgcgccctgcaaaatttactaaaata 36403061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 10509662 - 10509603
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||| ||||||||||||||||||||| || || |||||||| |||||||    
T  10509662 agactattactttttccaccctgctgccttctcgcgccccttgcaaaatttactaaaata 10509603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 149025 - 149083
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||| |||||||||||||||||||||  |||| |||||||| |||||||    
T  149025 gactattactttttccaccctgctgccttctcgcgcgtcctgaaaaatttactaaaata 149083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 53814645 - 53814707
Alignment:
Q  214 aaaagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||||||  |||||||||||||||||||||  |||| |||||||| |||||||    
T  53814645 aaaagactattacttttcccaccctgctgccttctcgcgcgtcctgcaaaatttactaaaata 53814707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 47646648 - 47646708
Alignment:
Q  216 aagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||||  |||| ||||||||||||| ||||| || |||||||| |||||||    
T  47646648 aagactattacttttcccaccatgctgccttctcgtgcaccgtgcaaaatttactaaaata 47646708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 41194151 - 41194092
Alignment:
Q  223 ttacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatatctctg 282  Q
    ||||||||  ||||||||||||||||||||| ||| | |||||||| |||||||| ||||    
T  41194151 ttacttttcccaccctgctgccttctcgcgcgcccggcaaaatttactaaaatatttctg 41194092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 49440699 - 49440654
Alignment:
Q  219 actattacttttttcaccctgctgccttctcgcgcaccctgtaaaa 264  Q
    ||||||||||||| ||||||| ||||||||||||| ||||| ||||    
T  49440699 actattactttttccaccctgttgccttctcgcgcgccctgcaaaa 49440654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 3518019 - 3517957
Alignment:
Q  214 aaaagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| |||||||| |||||||    
T  3518019 aaaagactattacttttcccaccctgctgccttctcgcgcaccctgcaaaatttactaaaata 3517957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 48965327 - 48965273
Alignment:
Q  222 attacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||    
T  48965327 attacttttttcaccctgctgccttcttgcgcgccctgtaaaatttactaaaata 48965273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 14587783 - 14587725
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||  ||||||||||||||||| ||||||||| |||||||| |||||||    
T  14587783 gactattacttttcccaccctgctgccttctcacgcaccctgcaaaatttactaaaata 14587725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 37951999 - 37952057
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||  |||||||||||||||||| |||||||| |||||||| |||||||    
T  37951999 agactattacttttc-caccctgctgccttctcgtgcaccctgcaaaatttactaaaata 37952057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 12700984 - 12700919
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatatctctg 282  Q
    ||||||||||||||| ||  ||||||||| ||||||  ||||| |||||||| |||||||||||||    
T  12700984 agactattactttttccattctgctgcctcctcgcgtgccctgcaaaatttactaaaatatctctg 12700919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 46597551 - 46597514
Alignment:
Q  239 gctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  46597551 gctgccttctcgcgcaccctgcaaaatttattaaaata 46597514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 22858456 - 22858520
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatatctctg 282  Q
    ||||||||||||| ||| | |||||||| ||||||||||||  |||||||| ||||||| |||||    
T  22858456 gactattacttttctcatcttgctgcctcctcgcgcaccctacaaaatttactaaaatacctctg 22858520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 3475699 - 3475664
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcg 252  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3475699 agactattacttttttcaccctgttgccttctcgcg 3475664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 44496187 - 44496242
Alignment:
Q  221 tattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||  |||  |||||||||||||||| ||||| ||||||||||||||||    
T  44496187 tattacttttcccactatgctgccttctcgcgcgccctgcaaaatttattaaaata 44496242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 29961095 - 29961153
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||| ||||  |||||||||||||||||||||||| ||  ||||||| |||||||    
T  29961095 gactattatttttcccaccctgctgccttctcgcgcaccatgcgaaatttactaaaata 29961153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 40105690 - 40105630
Alignment:
Q  216 aagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||    
T  40105690 aagactattactttttccaccctgctgcctcctcgcgcgccctgcaaaatttattaaaata 40105630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 6346999 - 6347057
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||  |||||||||||||||||||| ||||| |||||||| |||||||    
T  6346999 gactattactttttctaccctgctgccttctcgcgcgccctgcaaaatttactaaaata 6347057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 20091262 - 20091314
Alignment:
Q  215 aaagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||| |||||||    
T  20091262 aaagactattacttttcacaccctgctgccttctcgcgcgccctgcaaaattt 20091314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 8240426 - 8240363
Alignment:
Q  219 actattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatatctctg 282  Q
    ||||||||||||| ||||||||||||| ||||||| ||||  |||||||| |||||||| ||||    
T  8240426 actattactttttccaccctgctgcctcctcgcgcgccctacaaaatttactaaaatatttctg 8240363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 43098979 - 43098929
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    ||||||||||||||  ||||||||||||||||||||||||||  |||||||    
T  43098979 agactattacttttcccaccctgctgccttctcgcgcacccttcaaaattt 43098929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 29544102 - 29544153
Alignment:
Q  216 aagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    |||||||||||||||  |||||||||||||||||| || ||||| |||||||    
T  29544102 aagactattacttttcccaccctgctgccttctcgtgcgccctgcaaaattt 29544153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 45029461 - 45029402
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||    
T  45029461 agactattactttttccaccctgctgccttctcccgcaccctgcaaaatttactaaaata 45029402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 45228785 - 45228846
Alignment:
Q  215 aaagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||| |||||||| |||||||    
T  45228785 aaagactattactttttccaccctgctgtcttctcgcgcgccctgcaaaatttactaaaata 45228846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 35158415 - 35158474
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||  ||||||||||||| ||||||| ||||| |||||||| |||||||    
T  35158415 agactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaata 35158474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 52417377 - 52417314
Alignment:
Q  213 taaaagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||||||   |||||||||||||||||||  ||||| |||||||| |||||||    
T  52417377 taaaagactattacttttcctaccctgctgccttctcgcgtgccctgcaaaatttactaaaata 52417314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 55136364 - 55136422
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||| ||||||||||||| ||  ||||||||| |||||||| |||||||    
T  55136364 gactattactttttccaccctgctgcctcctttcgcaccctgcaaaatttactaaaata 55136422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 16023572 - 16023629
Alignment:
Q  219 actattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||| || ||| |||| ||||||||||||||| |||||||| |||||||    
T  16023572 actattactttttccatcctactgcgttctcgcgcaccctgcaaaatttactaaaata 16023629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 28781209 - 28781152
Alignment:
Q  219 actattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||| ||||| |||||||| |||| |||||||| |||||||| |||||||    
T  28781209 actattacttttctcaccatgctgcctcctcgtgcaccctgcaaaatttactaaaata 28781152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 49374019 - 49374071
Alignment:
Q  215 aaagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    ||||||||||||||||  ||||||||| ||||||||||| ||||| |||||||    
T  49374019 aaagactattacttttcccaccctgctaccttctcgcgcgccctgcaaaattt 49374071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 9036538 - 9036480
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||| |||||  |||||| ||||||| ||||| |||||||| |||||||    
T  9036538 gactattactttttccacccgactgcctcctcgcgcgccctgcaaaatttactaaaata 9036480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 40727723 - 40727781
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||| ||||||| |||||||||||||| |||||  |||||| |||||||| |||||||    
T  40727723 gactactacttttctcaccctgctgcctcctcgcataccctgcaaaatttactaaaata 40727781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 45924302 - 45924360
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||| ||| ||||||||||||||||| || || ||||||| | ||||||    
T  45924302 gactattactttttccactctgctgccttctcgcgcgccatgcaaaatttttaaaaata 45924360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 46439725 - 46439775
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    |||||||||||||| |||||||   |||||||| |||||||||||||||||    
T  46439725 agactattacttttctcaccctatggccttctcccgcaccctgtaaaattt 46439775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 28311325 - 28311276
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    |||||||||||||  |||||||||||||||||||||  |||| |||||||    
T  28311325 gactattacttttcccaccctgctgccttctcgcgcgtcctgcaaaattt 28311276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 38551697 - 38551653
Alignment:
Q  223 ttacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    ||||||||  ||||||||||||||||||||| ||||| |||||||    
T  38551697 ttacttttcccaccctgctgccttctcgcgcgccctgcaaaattt 38551653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 438743 - 438800
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaat 275  Q
    |||||||||||||  |||| |||||||||||||||||||||| |||||||| ||||||    
T  438743 gactattacttttcccaccatgctgccttctcgcgcaccctgaaaaatttactaaaat 438800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 303452 - 303510
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||  |||||||||| || |||||||| |||| |||||||| |||||||    
T  303452 gactattacttttcccaccctgctgtctcctcgcgcatcctgcaaaatttactaaaata 303510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 31271065 - 31271105
Alignment:
Q  236 cctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||||||| ||||| |||||||| |||||||    
T  31271065 cctgctgccttctcgcgcgccctgcaaaatttactaaaata 31271105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 34848314 - 34848254
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatatc 278  Q
    |||||||| ||||  |||||||||||||||||||||| |||  ||||||||||||||||||    
T  34848314 gactattatttttcccaccctgctgccttctcgcgcatcctacaaaatttattaaaatatc 34848254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 36312521 - 36312455
Alignment:
Q  216 aagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatatctctg 282  Q
    |||||||||||||||  ||||||||||||| ||||||||| ||  |||||||| ||||||| |||||    
T  36312521 aagactattacttttcccaccctgctgcctcctcgcgcactctacaaaatttactaaaatacctctg 36312455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 46254564 - 46254622
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||  ||||||||||||| ||||||| ||||| |||||||| |||||||    
T  46254564 gactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaata 46254622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 14817082 - 14817036
Alignment:
Q  221 tattacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    |||||||||||||||||| ||||||||||||||  |||| |||||||    
T  14817082 tattacttttttcaccctactgccttctcgcgcgtcctgcaaaattt 14817036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 15264078 - 15264032
Alignment:
Q  221 tattacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    |||||||||||||||||| ||||||||||||||  |||| |||||||    
T  15264078 tattacttttttcaccctactgccttctcgcgcgtcctgcaaaattt 15264032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 44862711 - 44862773
Alignment:
Q  214 aaaagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||| ||||||| |||| ||| | |||||||| ||||||||||||| |||||||| |||||||    
T  44862711 aaaaaactattatttttctcatcttgctgcctcctcgcgcaccctgcaaaatttactaaaata 44862773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 12723367 - 12723427
Alignment:
Q  216 aagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||||  ||||||||||||| ||||||| ||||| |||||||| |||||||    
T  12723367 aagactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaata 12723427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 13654675 - 13654738
Alignment:
Q  213 taaaagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||||||||||||  || ||||||||||||||| ||||  ||||||||||| |||||||    
T  13654675 taaaagactattacttttcccatcctgctgccttctcgtgcactatgtaaaatttactaaaata 13654738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 37012563 - 37012622
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    ||||||||| |||| ||||| ||||||||| |||||| ||||| ||||||||||||||||    
T  37012563 agactattatttttctcaccttgctgccttttcgcgcgccctgcaaaatttattaaaata 37012622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 16514033 - 16513984
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    |||||||||||||  ||||||||||||||||||||| ||||| |||||||    
T  16514033 gactattacttttcccaccctgctgccttctcgcgcgccctgcaaaattt 16513984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 12784850 - 12784910
Alignment:
Q  216 aagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||||  ||||||||||||| ||||||||||||| |  ||||| |||||||    
T  12784850 aagactattacttttcccaccctgctgcctcctcgcgcaccctgcaccatttactaaaata 12784910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 13822513 - 13822453
Alignment:
Q  216 aagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaata 276  Q
    |||||||||||||||  |||| |||||||| ||||||| ||||| |||||||| |||||||    
T  13822513 aagactattacttttcccaccttgctgcctcctcgcgcgccctgcaaaatttactaaaata 13822453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 253
Target Start/End: Complemental strand, 9715727 - 9715697
Alignment:
Q  223 ttacttttttcaccctgctgccttctcgcgc 253  Q
    |||||||||||||||||||||||||||||||    
T  9715727 ttacttttttcaccctgctgccttctcgcgc 9715697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 37030692 - 37030654
Alignment:
Q  214 aaaagactattacttttttcaccctgctgccttctcgcg 252  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  37030692 aaaagactattactttttccaccatgctgccttctcgcg 37030654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 8197105 - 8197170
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatatctctg 282  Q
    ||||||||||||||  ||||| ||||||||||||| | | ||| |||||||| ||||||| |||||    
T  8197105 agactattacttttcccaccccgctgccttctcgcacgctctgcaaaatttactaaaatacctctg 8197170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 37883125 - 37883174
Alignment:
Q  218 gactattacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    |||||||||||||| ||||||  ||||||||||||| ||||| |||||||    
T  37883125 gactattactttttccaccctattgccttctcgcgcgccctgcaaaattt 37883174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 8734392 - 8734450
Alignment:
Q  217 agactattacttttttcaccctgctgccttctcgcgcaccctgtaaaatttattaaaatat 277  Q
    ||||||||||||||| |||  |||| |||||||||||| ||||||||||||| ||||||||    
T  8734392 agactattactttttccacg-tgct-ccttctcgcgcatcctgtaaaatttactaaaatat 8734450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 37094240 - 37094292
Alignment:
Q  215 aaagactattacttttttcaccctgctgccttctcgcgcaccctgtaaaattt 267  Q
    ||||| ||||||||||  ||||||| || |||||||||| |||||||||||||    
T  37094240 aaagagtattacttttcccaccctgttgacttctcgcgcgccctgtaaaattt 37094292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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