View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3336_low_8 (Length: 290)
Name: NF3336_low_8
Description: NF3336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3336_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 54 - 272
Target Start/End: Complemental strand, 13576713 - 13576490
Alignment:
| Q |
54 |
aaaaatcgtaccacaaa-tcagctttaaaattaacatagaatttataaaagaacccaataacattcaagattcatcatcataaaacagccattagattca |
152 |
Q |
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| T |
13576713 |
aaaaattgtaccacaaaatcagctttaaaattaacatagcatttataaaagaacccaataacattcaagattcatcatcataaaaaagccattagattaa |
13576614 |
T |
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| Q |
153 |
atttcttaaca----catagaaaatcagactaaagtcacaaaagatacatcaaacctaaggacataaccctaattatagatccaactaatctcatctaga |
248 |
Q |
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| T |
13576613 |
atttcttaacaaacacattgaaaatcagactaaagtcacaaaagatacatcaaacctaagaacacaaccctaattatagatcctgctaatctcatctaaa |
13576514 |
T |
|
| Q |
249 |
ccctaaatctaagccctttcgcct |
272 |
Q |
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|||||||||||||||||||||||| |
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| T |
13576513 |
ccctaaatctaagccctttcgcct |
13576490 |
T |
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