View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3337_low_1 (Length: 404)
Name: NF3337_low_1
Description: NF3337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3337_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 45464267 - 45464640
Alignment:
| Q |
19 |
tagaagagacgtggaaactgaaatggcgtcnnnnnnnggaatgaactccaccaatgggtttgggtctctgaagattagttttgatgcaggaaaggttagt |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45464267 |
tagaagagacgtggaaactgaaatggcgtcaaaaaaaggaatgaactccaccaatgggtttgggtctctgaagattagttttgatgcaggaaaggttagt |
45464366 |
T |
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| Q |
119 |
gctgccggaaattccagacggaatggtattagttatatgtctcagcagcaaatgaagaatatcttggcggaaaaggctcagaagttgattcgtaagaagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45464367 |
gctgccggaaattccagacggaatggtattagttatatgtctcagcagcaaatgaagaatatcttggcggaaaaggctcagaagttgattcgtaagaagc |
45464466 |
T |
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| Q |
219 |
ttgatgagtggaaagagagccgtaggaagcttgatgagtggaaggagatccgtaaaaaacttgatgaacggtatctatcttcaatatcaaagaacactgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45464467 |
ttgatgagtggaaagagagccgtaggaagcttgatgagtggaaggagatccgtaaaaaacttgatgaacggtatccatcttcaatatcaaagaacactgt |
45464566 |
T |
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| Q |
319 |
cccagaaattagagtgaagcctggtccaaaagaaactgtcaagtctgagaacaagaacaaacctatctctgctg |
392 |
Q |
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| T |
45464567 |
cccagaagttagagtgaagcctggtccaaaagaaattgtcaagtctgagaacaagaacaaacctatctctgctg |
45464640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 337
Target Start/End: Complemental strand, 25351200 - 25351040
Alignment:
| Q |
177 |
atatcttggcggaaaaggctcagaagttgattcgtaagaagcttgatgagtggaaagagagccgtaggaagcttgatgagtggaaggagatccgtaaaaa |
276 |
Q |
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| T |
25351200 |
atatctttgcggaaaaggctcggaaggaaattcttaagaagcttgatgagtggaaagagagccgtatgaatttcgatgaatggaaggagatccgtaaaaa |
25351101 |
T |
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| Q |
277 |
acttgatgaacggtatctatcttcaatatcaaagaacactgtcccagaaattagagtgaag |
337 |
Q |
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| T |
25351100 |
acttgatgaatgatatatgtcttctatatcaaagaacactgttgcagaagttagagtgaag |
25351040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 205 - 337
Target Start/End: Original strand, 24919759 - 24919891
Alignment:
| Q |
205 |
gattcgtaagaagcttgatgagtggaaagagagccgtaggaagcttgatgagtggaaggagatccgtaaaaaacttgatgaacggtatctatcttcaata |
304 |
Q |
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| T |
24919759 |
gattcgtaggaagcttgatgagtggaaagagagccgtaggaattttgatgagtggaaggagatccgtaataagttttatgaacgatatatgtcttatata |
24919858 |
T |
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| Q |
305 |
tcaaagaacactgtcccagaaattagagtgaag |
337 |
Q |
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| T |
24919859 |
tcaaagaacactattgcagaagttagagtgaag |
24919891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 205 - 336
Target Start/End: Complemental strand, 24919727 - 24919596
Alignment:
| Q |
205 |
gattcgtaagaagcttgatgagtggaaagagagccgtaggaagcttgatgagtggaaggagatccgtaaaaaacttgatgaacggtatctatcttcaata |
304 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||| ||| | ||||| ||| |
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| T |
24919727 |
gattcgtaggaagcttgatgagtcgaaagagagccgtaggaattttgatgagttgaaggagattcgtaaaaagcttgatgaataatatttgtcttctata |
24919628 |
T |
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| Q |
305 |
tcaaagaacactgtcccagaaattagagtgaa |
336 |
Q |
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| T |
24919627 |
tcaaagaacactattgcagaagttagagtgaa |
24919596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 25351201 - 25351299
Alignment:
| Q |
218 |
cttgatgagtggaaagagagccgtaggaagcttgatgagtggaaggagatccgtaaaaaacttgatgaacggtatctatcttcaatatcaaagaacact |
316 |
Q |
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|||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||||||||||| |
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| T |
25351201 |
cttgatgagtggaaagagagtcgtaggaatttcgatgagtggaaggagatccgtaaaaagcttgatgaacaatatcagtcttctatatcaaagaacact |
25351299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 24919916 - 24919976
Alignment:
| Q |
332 |
gtgaagcctggtccaaaagaaactgtcaagtctgagaacaagaacaaacctatctctgctg |
392 |
Q |
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|||||||||||||||||||||| ||| | || |||||||| |||||| ||||||||||| |
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| T |
24919916 |
gtgaagcctggtccaaaagaaattgttgattcggagaacaaaaacaaatttatctctgctg |
24919976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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