View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3339_low_2 (Length: 439)

Name: NF3339_low_2
Description: NF3339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3339_low_2
NF3339_low_2
[»] chr5 (7 HSPs)
chr5 (167-422)||(33807959-33808213)
chr5 (167-422)||(33811613-33811867)
chr5 (167-422)||(33816531-33816785)
chr5 (1-166)||(3653072-3653237)
chr5 (68-167)||(34850162-34850258)
chr5 (250-344)||(16698504-16698601)
chr5 (166-219)||(16698618-16698671)
[»] chr6 (4 HSPs)
chr6 (166-422)||(31151925-31152183)
chr6 (166-363)||(22981504-22981711)
chr6 (166-363)||(23806697-23806904)
chr6 (243-422)||(1111378-1111561)
[»] chr3 (9 HSPs)
chr3 (165-422)||(50603145-50603405)
chr3 (167-416)||(54967210-54967477)
chr3 (167-363)||(44782524-44782733)
chr3 (318-423)||(31725346-31725449)
chr3 (250-416)||(39298736-39298908)
chr3 (179-363)||(54979854-54980051)
chr3 (248-363)||(18556392-18556511)
chr3 (166-219)||(17645928-17645982)
chr3 (246-274)||(17645869-17645897)
[»] chr1 (2 HSPs)
chr1 (166-381)||(29706853-29707069)
chr1 (250-341)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (185-416)||(26516-26752)
[»] chr8 (3 HSPs)
chr8 (166-416)||(41481548-41481816)
chr8 (167-416)||(36167547-36167813)
chr8 (172-360)||(18951129-18951326)
[»] chr7 (10 HSPs)
chr7 (167-363)||(4842648-4842857)
chr7 (167-416)||(25857131-25857395)
chr7 (167-416)||(4835575-4835840)
chr7 (248-363)||(13465046-13465165)
chr7 (165-217)||(24380113-24380165)
chr7 (241-361)||(17845847-17845969)
chr7 (250-363)||(24379370-24379487)
chr7 (370-422)||(8252797-8252849)
chr7 (250-344)||(27341025-27341120)
chr7 (167-237)||(24379279-24379347)
[»] scaffold0479 (1 HSPs)
scaffold0479 (167-363)||(2727-2936)
[»] chr4 (4 HSPs)
chr4 (167-416)||(9757212-9757480)
chr4 (250-361)||(42682924-42683038)
chr4 (248-344)||(37286972-37287069)
chr4 (367-423)||(25003133-25003189)
[»] chr2 (2 HSPs)
chr2 (252-344)||(37037942-37038035)
chr2 (185-219)||(37038074-37038108)
[»] scaffold0003 (2 HSPs)
scaffold0003 (167-219)||(342217-342269)
scaffold0003 (250-344)||(342306-342404)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 167 - 422
Target Start/End: Complemental strand, 33808213 - 33807959
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 266  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33808213 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33808116  T
Q  267 ccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 365  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808115 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 33808016  T
Q  366 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatattttt 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808015 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatattttt 33807959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 167 - 422
Target Start/End: Complemental strand, 33811867 - 33811613
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 266  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33811867 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33811770  T
Q  267 ccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 365  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811769 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 33811670  T
Q  366 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatattttt 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811669 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatattttt 33811613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 167 - 422
Target Start/End: Complemental strand, 33816785 - 33816531
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 266  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33816785 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa 33816688  T
Q  267 ccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 365  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816687 ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 33816588  T
Q  366 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatattttt 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816587 taactatgtatctcaatttgtagatacaactctcacaaattggctcactatattttt 33816531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 3653072 - 3653237
Alignment:
Q  1 tcgtcatgcatacagatggttgtggaaaaagggagtcaaagaaggaggaaaacgaagcagtggtggagtccttggaactgaaaagttgattgaaattcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3653072 tcgtcatgcatacagatggttgtggaaaaagggagtcaaagaaggaggaaaacgaagcagtggtggagtccttggaactgaaaagttgattgaaattcac 3653171  T
Q  101 ggttgatgaagaattggaagaagaccatgtttggtttttgttgttatccatgttcatagatatgtt 166  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3653172 ggttgatgaagaattggaagaagaacatgtttggtttttgttgttatccatgttcatagatatgtt 3653237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 34850258 - 34850162
Alignment:
Q  68 gtccttggaactgaaaagttgattgaaattcacggttgatgaagaattggaagaagaccatgtttggtttttgttgttatccatgttcatagatatgttt 167  Q
    |||||||| || |||||||||||  || ||||||||||||||||||   ||||||||||||| ||| |||||||||||||||||||| | |||| |||||    
T  34850258 gtccttgggaccgaaaagttgatcaaatttcacggttgatgaagaa---gaagaagaccatgcttgctttttgttgttatccatgtttaaagatgtgttt 34850162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 344
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
Q  250 aattttagcgtggaaaaccttctca-tgtgagtaagg-aaaaaccacgggacccgtaggcctcttaaatct-ccactataataataatgggaatacaa 344  Q
    |||||||| ||||||| |||||||| |||||| |||| |||||  | ||||||| | | ||||||||| || |||||||||| |||||||||||||||    
T  16698601 aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa 16698504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 16698671 - 16698618
Alignment:
Q  166 ttgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcact 219  Q
    ||||||||||||   ||| |||||||| ||||||||||||||| ||||||||||    
T  16698671 ttgttgggaaatatatgcataatttccatcctccgtgaactcagaataggcact 16698618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 166 - 422
Target Start/End: Original strand, 31151925 - 31152183
Alignment:
Q  166 ttgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa 265  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  31151925 ttgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaa 31152024  T
Q  266 accttctca-tgtgagtaaggaaaa-accacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtgga 363  Q
    ||||||||| |||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31152025 accttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatgga 31152124  T
Q  364 cctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatattttt 422  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  31152125 cctaactacgtatctaaatttatagatacaactctcacaaattggcttactatattttt 31152183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 166 - 363
Target Start/End: Complemental strand, 22981711 - 22981504
Alignment:
Q  166 ttgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaatttta 256  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||  |||||||||||  ||||| |        |||||  | |||||||    
T  22981711 ttgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaatttta 22981615  T
Q  257 gcgtggaaaaccttctc-atgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcac 352  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | ||||||    
T  22981614 gcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcac 22981515  T
Q  353 cctcaggtgga 363  Q
    ||| |||||||    
T  22981514 ccttaggtgga 22981504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 166 - 363
Target Start/End: Original strand, 23806697 - 23806904
Alignment:
Q  166 ttgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaatttta 256  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||  |||||||||||  ||||| |        |||||  | |||||||    
T  23806697 ttgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaatttta 23806793  T
Q  257 gcgtggaaaaccttctc-atgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcac 352  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | ||||||    
T  23806794 gcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcac 23806893  T
Q  353 cctcaggtgga 363  Q
    ||| |||||||    
T  23806894 ccttaggtgga 23806904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 243 - 422
Target Start/End: Original strand, 1111378 - 1111561
Alignment:
Q  243 acaacaaaattttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccacta-taataataatgggaat 340  Q
    ||||||||||||||| || ||||||||||| | ||| | |||||||||| || ||||| | || | ||||||||||| |  || ||||||||||| ||||    
T  1111378 acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat 1111477  T
Q  341 acaaatcttcaccctcaggtggacctaactatgtatctcaatttg--tagatacaactctcacaaattggctcactatattttt 422  Q
    |||||  |||||||| | ||  |||||||||||||||||||||||  |||||| |  ||||||||||||| ||  |||||||||    
T  1111478 acaaactttcacccttacgtaaacctaactatgtatctcaatttgtatagatatatttctcacaaattggttccttatattttt 1111561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 165 - 422
Target Start/End: Complemental strand, 50603405 - 50603145
Alignment:
Q  165 tttgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaa 264  Q
    |||||||||||||||| |   |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  50603405 tttgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaa 50603306  T
Q  265 aaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtgga 363  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||    
T  50603305 aaccttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatgga 50603206  T
Q  364 cctaactatgtatctcaatttgtagatacaactctc--acaaattggctcactatattttt 422  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  50603205 cctaactatatatctcaatttgtagatacaactctcatacaaattggctcactatattttt 50603145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 416
Target Start/End: Original strand, 54967210 - 54967477
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt 255  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||  |||||||||||| |           ||||||||| || | ||||||    
T  54967210 tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcac--tagcggaaacgtgaaataaaagcgtaatgacaca-aagagaatttt 54967306  T
Q  256 agcgtggaaaaccttctc-atgtgagtaa-ggaaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttc 350  Q
    |||||||||||||||||| || |||| || |||||||||||||||||| | ||||||||  |||  ||||||||||| ||||||||||||||| | ||||    
T  54967307 agcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc 54967406  T
Q  351 accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 416  Q
    ||||| ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  54967407 acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 54967477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 363
Target Start/End: Original strand, 44782524 - 44782733
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt 255  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||||||||| |           ||||||||| || | ||||||    
T  44782524 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 44782620  T
Q  256 agcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc 350  Q
    |||||||||||||||||| || |||| ||||  |||||||||||||||| | | ||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  44782621 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttc 44782720  T
Q  351 accctcaggtgga 363  Q
    ||||| |||||||    
T  44782721 acccttaggtgga 44782733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 318 - 423
Target Start/End: Original strand, 31725346 - 31725449
Alignment:
Q  318 tccactataataataatgggaatacaaatcttcaccctcaggtggacctaactatgtatctcaatttgtagatacaactctcacaaattggctcactata 417  Q
    |||| ||||| ||||||| |||||||||||||||| || |||||||||| || ||||||||||||||||||  |||| ||||||||||||  | ||||||    
T  31725346 tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtag--acaattctcacaaattgattaactata 31725443  T
Q  418 tttttt 423  Q
    ||||||    
T  31725444 tttttt 31725449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 416
Target Start/End: Complemental strand, 39298908 - 39298736
Alignment:
Q  250 aattttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa-atc 347  Q
    |||||||| ||| |||||||||||| |||||  ||||||||| |||||||||| |  ||||||||||  ||||||||||| |||| |||||||||| | |    
T  39298908 aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac 39298809  T
Q  348 ttcaccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 416  Q
    |||||||| ||||||| |||||     ||| | ||||||||||||   || |||||||||||||||||||||||    
T  39298808 ttcacccttaggtggatctaactacaatatatctctcaatttgtaaggac-actctcacaaattggctcactat 39298736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 54979854 - 54980051
Alignment:
Q  179 cctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattttagcgtggaaaac 267  Q
    ||||| ||||||||||||||||| ||||||||||| |||||  ||||||||||| ||||           |||||| || | ||||||||| ||||||||    
T  54979854 cctgcataatttccctcctccgtcaactcaaaataagcact--agcggaaacgtgaaataaaagtgtaatgacaca-aagagaattttagcatggaaaac 54979950  T
Q  268 cttctca-tgtgagtaagg-aaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttcaccctcaggtgg 362  Q
    ||||||| | |||| |||| |||||||||||||||| | ||||||||  |||  ||||||||||| ||||||||||||||| | ||||||||| ||||||    
T  54979951 cttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgg 54980050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 363
Target Start/End: Original strand, 18556392 - 18556511
Alignment:
Q  248 aaaattttagcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa 344  Q
    |||||||||||||||||||||||||| || |||| ||||  ||||||||||||||||    ||||||||||  ||||||||||| | |||| ||||||||    
T  18556392 aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa 18556491  T
Q  345 -atcttcaccctcaggtgga 363  Q
     | ||||||||| |||||||    
T  18556492 caacttcacccttaggtgga 18556511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 17645982 - 17645928
Alignment:
Q  166 ttgttgggaaatg-cctgcttaatttccctcctccgtgaactcaaaataggcact 219  Q
    ||||||||||||| ||| | ||||||||||| |||||||||||||||||| ||||    
T  17645982 ttgttgggaaatgacctccataatttccctcatccgtgaactcaaaatagacact 17645928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 17645897 - 17645869
Alignment:
Q  246 acaaaattttagcgtggaaaaccttctca 274  Q
    |||||||||||||||||||||||||||||    
T  17645897 acaaaattttagcgtggaaaaccttctca 17645869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 166 - 381
Target Start/End: Original strand, 29706853 - 29707069
Alignment:
Q  166 ttgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa 265  Q
    ||||||| |||||||| | ||||||| ||| |||||||||| |||||| ||||||||||  ||| ||||||||||||||||||||||||||| | |||||    
T  29706853 ttgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaa 29706952  T
Q  266 accttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 364  Q
    ||||||||| | ||||||||||| || |||||||| | ||| |||||||||||||||||||||||||||||| |  | |||||||||||||| |||||||    
T  29706953 accttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggac 29707052  T
Q  365 ctaactatgtatctcaa 381  Q
    |||||||||||||||||    
T  29707053 ctaactatgtatctcaa 29707069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 341
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
Q  250 aattttagcgtggaaaaccttctca-tgtgagtaaggaaaaac-cacgggacccgtaggcctcttaaatctccactataataataatgggaata 341  Q
    |||||| ||||| |||||||||||| |||||| |||||||||  ||||||  ||   || ||||||||  ||||||||||||||||||||||||    
T  27642225 aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata 27642132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 185 - 416
Target Start/End: Original strand, 26516 - 26752
Alignment:
Q  185 taatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctc-atgtgagtaa 283  Q
    |||| |||||||| |||||||||||||||| |||||||||| |||||||||||   ||||||||||||||||| |||||||||||| || ||||||||||    
T  26516 taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaat--aacacaacaaaattttagggtggaaaaccttttcaatgtgagtaa 26613  T
Q  284 ggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaat-cttcaccctcaggtggacctaacta-----tgtatc 377  Q
    |||||||| ||||||||| | |||||||||||  |||||| |||| |||| | |||||||| | || |||||| ||||||| || ||||     | | ||    
T  26614 ggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaactactccacccttaggtggatctcactacaatttatctc 26713  T
Q  378 tcaatttgtagatacaactctcacaaattggctcactat 416  Q
    ||||||||||   |  |||||||||||||||||||||||    
T  26714 tcaatttgtaaggaacactctcacaaattggctcactat 26752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 166 - 416
Target Start/End: Complemental strand, 41481816 - 41481548
Alignment:
Q  166 ttgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt 254  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | |||||    
T  41481816 ttgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaattt 41481720  T
Q  255 tagcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atctt 349  Q
    ||||||||||||||||||| || |||| ||||  |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | |||    
T  41481719 tagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaactt 41481620  T
Q  350 caccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 416  Q
    |||||| ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  41481619 cacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 41481548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 416
Target Start/End: Complemental strand, 36167813 - 36167547
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt 255  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||| |           ||||||||| || | ||||||    
T  36167813 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 36167717  T
Q  256 agcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc 350  Q
    |||||||||||||||||| || |||| ||||  ||||||||| |||||| | ||||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  36167716 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 36167618  T
Q  351 accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 416  Q
    ||||| ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  36167617 acccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat 36167547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 360
Target Start/End: Original strand, 18951129 - 18951326
Alignment:
Q  172 ggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat------gacacacaacaaaattttagcgtggaaa 265  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||  |||||||||| | ||||      |  |    ||| ||||||||| ||||||    
T  18951129 ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcac--tagcggaaacatgaaatataagcgtaatgacacagaattttagcatggaaa 18951226  T
Q  266 accttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcaccctcaggt 360  Q
    |||||||| ||||||| ||||  |||||||||| ||||  | ||| ||||||| | ||||||||||| ||||||||||||||| | ||||||||| ||||    
T  18951227 accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggt 18951326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 167 - 363
Target Start/End: Original strand, 4842648 - 4842857
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt 255  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||| |           ||||||||| || | ||||||    
T  4842648 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataagtgtaatgacaca-aagagaatttt 4842744  T
Q  256 agcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc 350  Q
    |||||||||||||||||| ||||||| ||||  ||||||||| |||||| | ||||||||||| | ||||||||||| ||||| ||||||||| | ||||    
T  4842745 agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaacttc 4842844  T
Q  351 accctcaggtgga 363  Q
    ||||| |||||||    
T  4842845 acccttaggtgga 4842857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 167 - 416
Target Start/End: Original strand, 25857131 - 25857395
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 255  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||  ||||||||||| ||||           |||||| |    ||||||    
T  25857131 tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aatttt 25857225  T
Q  256 agcgtggaaaaccttctca-tgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttca 351  Q
    ||||||||||||||||||| |||||| || |||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | |||||    
T  25857226 agcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttca 25857325  T
Q  352 ccctcaggtggacctaact---atgtatctc--aatttgtagatacaactctcacaaattggctcactat 416  Q
    || | ||||||| || |||   || ||||||  ||||||||   |  |||||||||||||||||||||||    
T  25857326 cctttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactat 25857395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 167 - 416
Target Start/End: Original strand, 4835575 - 4835840
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttagc 258  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||  || |||||||| ||||  | ||      ||| | | |||||||||    
T  4835575 tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc 4835672  T
Q  259 gtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc 353  Q
    ||||||||||||||| ||||||| ||||  |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||| ||| | |||||||    
T  4835673 gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc 4835772  T
Q  354 ctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 416  Q
    || ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  4835773 cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat 4835840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 248 - 363
Target Start/End: Original strand, 13465046 - 13465165
Alignment:
Q  248 aaaattttagcgtggaaaaccttctc-atgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa 344  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||||| |||||| | ||||||||||| | ||||||||||| |||||||||||||||    
T  13465046 aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa 13465145  T
Q  345 -atcttcaccctcaggtgga 363  Q
     |  ||||||||||||||||    
T  13465146 caagttcaccctcaggtgga 13465165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 24380165 - 24380113
Alignment:
Q  165 tttgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggca 217  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  24380165 tttgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca 24380113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 361
Target Start/End: Complemental strand, 17845969 - 17845847
Alignment:
Q  241 acacaacaaaattttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaa 339  Q
    |||||| | |||||||| ||||||||||||| || |||||| ||||||||||||| |||||  | | |||||||||  ||||||||||| ||||||| ||    
T  17845969 acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa 17845870  T
Q  340 tacaa-atcttcaccctcaggtg 361  Q
    ||||| | ||||||||| |||||    
T  17845869 tacaacaacttcacccttaggtg 17845847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 363
Target Start/End: Original strand, 24379370 - 24379487
Alignment:
Q  250 aattttagcgtggaaaaccttctc-atgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-a 345  Q
    ||||||| |||||||||||||||| ||||||| || ||||||||||||||| |  | ||||||||||| | ||||||||||| ||||| ||||||||| |    
T  24379370 aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaaca 24379469  T
Q  346 tcttcaccctcaggtgga 363  Q
     ||||||||| |||||||    
T  24379470 acttcacccttaggtgga 24379487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 8252797 - 8252849
Alignment:
Q  370 tatgtatctcaatttgtagatacaactctcacaaattggctcactatattttt 422  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  8252797 tatgtatctcaatttgtagatacaactatcataaattgactcactatattttt 8252849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 344
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
Q  250 aattttagcgtggaaaaccttctc-atgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa 344  Q
    |||||||||||||||||||||||| |||| || |||||||||||||||||||| |   |||||||||  || |||| ||| ||||||| |||||||    
T  27341025 aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa 27341120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 24379279 - 24379347
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat 237  Q
    |||||| ||||| || | ||||||| |||||||||||||| |||||||||||  ||| |||||||||||||    
T  24379279 tgttggaaaatgtctacataatttctctcctccgtgaacttaaaataggcac--tagtggaaacgtaaaat 24379347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 363
Target Start/End: Complemental strand, 2936 - 2727
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 255  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  2936 tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt 2840  T
Q  256 agcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc 350  Q
    |||||||||||||||||| ||||||| ||||  |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  2839 agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 2740  T
Q  351 accctcaggtgga 363  Q
    ||||| |||||||    
T  2739 acccttaggtgga 2727  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 416
Target Start/End: Original strand, 9757212 - 9757480
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 255  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||| ||||           |||||| || | ||||||    
T  9757212 tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt 9757308  T
Q  256 agcgtggaaaaccttctca-tgtgagtaagg-aaaaaccacgggacccgtaggcctcttaaatc---tccactataataataatgggaatacaa-atctt 349  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||||| | |||||||||||     ||||||||||| ||||||||||||||| | |||    
T  9757309 agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaactt 9757408  T
Q  350 caccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat 416  Q
    |||||| ||||||| || ||     ||| | ||||||||||||   |  |||||||||||||||||||||||    
T  9757409 cacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat 9757480  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 250 - 361
Target Start/End: Original strand, 42682924 - 42683038
Alignment:
Q  250 aattttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatct-ccactataataataatgggaatacaa-at 346  Q
    ||||| ||||||||||||||||||| |||||| ||||||||| |||||||||| | | ||||||||| || |||||||||| ||||||||||||||| |     
T  42682924 aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaa 42683023  T
Q  347 cttcaccctcaggtg 361  Q
    ||||||||| |||||    
T  42683024 cttcacccttaggtg 42683038  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 344
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
Q  248 aaaattttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa 344  Q
    ||||||||||| ||||||||||||||| |||||  ||||||||| |||||||||| || || |||||||  |||||||||||||||||  ||||||||    
T  37286972 aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa 37287069  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 25003133 - 25003189
Alignment:
Q  367 aactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttt 423  Q
    |||||||||||| ||||||||||||||| ||| |||||||   ||| ||||||||||    
T  25003133 aactatgtatcttaatttgtagatacaattcttacaaattacttcattatatttttt 25003189  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 344
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
Q  252 ttttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa 344  Q
    |||||||| |||||||||||||| |||||| ||||| |||||||||||||| | |||||||||||  | ||||||||  |||||| ||||||||    
T  37038035 ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa 37037942  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 37038108 - 37038074
Alignment:
Q  185 taatttccctcctccgtgaactcaaaataggcact 219  Q
    ||||||| |||||||||||||||||||||||||||    
T  37038108 taatttctctcctccgtgaactcaaaataggcact 37038074  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 342217 - 342269
Alignment:
Q  167 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcact 219  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  342217 tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcact 342269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 344
Target Start/End: Original strand, 342306 - 342404
Alignment:
Q  250 aattttagcgtggaaaaccttctca-tgtgagtaa-ggaa-aaaccacgggacccgtaggcctcttaaatct-ccactataataataatgggaatacaa 344  Q
    |||||||||||| |||||||||||| | |||| || |||| ||||||||||| || | ||||||||||| || |||||||||| |||||||||||||||    
T  342306 aattttagcgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa 342404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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