View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3339_low_4 (Length: 237)
Name: NF3339_low_4
Description: NF3339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3339_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30736723 - 30736508
Alignment:
| Q |
1 |
ctaatctatctatatcataacagtgttgctatatgatacgagagaacaggccgatgaattgcacggtacactattttctatcctatttttatggattctt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30736723 |
ctaatctatctatatcataacagtggtgctatatga-----gagaaaaggccgatgaattgcacggtacactattttctatcctattttcatggattctt |
30736629 |
T |
|
| Q |
101 |
tcaaattaaaaaataattaaagtcaaaatattcagagagaacagccttgaacaaccttaattgtcttcatcctgaagaccatccttgtcacgacgactca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30736628 |
tcaaattaaaaaataattaaagtcaaaatattcagagagaacagccttgaacaaccttaattgtcttcatcctgaagaccatccttgtcacgacaactca |
30736529 |
T |
|
| Q |
201 |
ctatattcatcatcaccattg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30736528 |
ctatattcatcatcaccattg |
30736508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University