View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3340-Insertion-3 (Length: 1130)
Name: NF3340-Insertion-3
Description: NF3340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3340-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 55 - 551
Target Start/End: Complemental strand, 53310505 - 53310006
Alignment:
| Q |
55 |
ctcttgcttatcaatgtatctattagttttattctatatg--------------cataaaagcgtcctttttcagaaaaaacaaaatatttttgctgatt |
140 |
Q |
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| T |
53310505 |
ctcttgcttatcaatgtatctattagttttattctatatatacacacacacatacataaaagtgtcctttttcagaaaaaacaaaatacttttgctgatt |
53310406 |
T |
|
| Q |
141 |
gttagtaaaaatgatgtgtgtgttatacaatatcatttttcagaatcaatatcccttttattcatacaaattaaagcacaactttacttacatgtaattt |
240 |
Q |
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| T |
53310405 |
gttagtaaaaatgatgtgtgt--tatacaatatcatttttcagaatcaatatcccttttattcatacaaattaaagcacaactttacttacatgtaattt |
53310308 |
T |
|
| Q |
241 |
caattggattaattaacttactcataatcaaccagcatttcttgctggcgttatatatattagtacaccgatcttattactgaccatctttatatagcca |
340 |
Q |
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| T |
53310307 |
caattggattaattaacttactcataatcaaccagcatttcttgctggcgtt----atattagtacaccgatcttattactgaccatctttatatagcca |
53310212 |
T |
|
| Q |
341 |
aattattttaatttacttcatacttttcctgaaagtacaaattaaattaacaatcccaaaacgattaaccatctttcatgtttttgatgtgatgtggtag |
440 |
Q |
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| T |
53310211 |
aattattttaatttacttcatacttttcctgaaagtacaaattaaattaacaatcccaaaacgattaaccatctttcatgtttt-----tgatgtggtag |
53310117 |
T |
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| Q |
441 |
ataagcttatgcctctcctgtacttcttgtacctttccttgagtttcccttcgctggaagtatccgaattctctttgccacacgtacaaaatctctgaat |
540 |
Q |
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| T |
53310116 |
ataagcttatgcctctcctgtacttcttgtacctttccttgagttccccttcgctggaagtatccgaattctctttgccacacgtacaaaatctctgaat |
53310017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 702 - 1130
Target Start/End: Complemental strand, 53309613 - 53309155
Alignment:
| Q |
702 |
gttaacacaaaaattaaagtggtttggatggaaccatcacccaccacaatatgaagtattattttannnnnnnnn-acaagaatacgatctgaagtatta |
800 |
Q |
| |
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| T |
53309613 |
gttaacacaaaaattaaagtggtttggatggaaccatcagccaccacaatatgaagtattattttaattttttttgacaagaatacaatctgaagtatta |
53309514 |
T |
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| Q |
801 |
tagtaacgtaaaattttcaactatttatatatggcatgannnnnnnnnnnnnnnnacaggaattatatggcatgattgacaactgattatatagtttttc |
900 |
Q |
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| T |
53309513 |
tagtaacgtaaaattttcaactatttatat--ggcatgatttttttattttttttacaggaattatatggcatgattgacaactgattatatagtttttc |
53309416 |
T |
|
| Q |
901 |
atttagaagctatatttttctcaagca--------------aattaaatagctcataataattaattaaggaagagagaaattta----tataattgaga |
982 |
Q |
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| T |
53309415 |
atttagaagctatatttttctcaagcatttataaacaagcaaattaaatagctcataataattaattaaggaagagagaaatttatatatataattgaga |
53309316 |
T |
|
| Q |
983 |
gatgaac-agatcgatgcttacttccaggtaagatca-cagc-aga--gagatcattctccatgtcttcata-gca--tacatga-caggaat-gcatta |
1072 |
Q |
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| T |
53309315 |
gatgaacaagatcgatgcttacttccaggtaagatcaccagcaagaagaagatcattctccatgtcttcataggcaataacatgaccaggaatggcatta |
53309216 |
T |
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| Q |
1073 |
gaaagatc-agatgatgatcaccggcgtcgcagtcatc--ggcaatcgacaaacatctggc |
1130 |
Q |
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| T |
53309215 |
gaaagatcaagatgatgatcaccggcgtcgcagtcatccgtgcaatcgacaaacatctggc |
53309155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 669 - 704
Target Start/End: Complemental strand, 53309822 - 53309787
Alignment:
| Q |
669 |
gactctttatatatgttttcaattctaatttatgtt |
704 |
Q |
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| T |
53309822 |
gactctttatatatgttttcaattctaatttatgtt |
53309787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 53311003 - 53310974
Alignment:
| Q |
8 |
tgatttcatgtttttccttagttatttcat |
37 |
Q |
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| T |
53311003 |
tgatttcatgtttttccttagttatttcat |
53310974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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