View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3340-Insertion-5 (Length: 480)

Name: NF3340-Insertion-5
Description: NF3340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3340-Insertion-5
NF3340-Insertion-5
[»] chr3 (9 HSPs)
chr3 (6-480)||(13031098-13031573)
chr3 (6-142)||(15714391-15714527)
chr3 (7-143)||(15260135-15260271)
chr3 (6-142)||(19021957-19022093)
chr3 (6-142)||(17720728-17720864)
chr3 (6-74)||(4175917-4175985)
chr3 (95-142)||(4175860-4175907)
chr3 (191-231)||(17720734-17720774)
chr3 (191-231)||(19021963-19022003)
[»] chr6 (2 HSPs)
chr6 (6-409)||(12431616-12432024)
chr6 (407-480)||(12432787-12432860)
[»] chr2 (2 HSPs)
chr2 (299-472)||(23002514-23002689)
chr2 (12-143)||(31139926-31140057)
[»] chr7 (5 HSPs)
chr7 (6-143)||(39286220-39286357)
chr7 (13-143)||(13937196-13937326)
chr7 (106-171)||(17218765-17218829)
chr7 (29-83)||(9987133-9987187)
chr7 (12-52)||(5212646-5212686)
[»] chr1 (2 HSPs)
chr1 (6-142)||(30774767-30774903)
chr1 (6-142)||(23246294-23246430)
[»] chr4 (5 HSPs)
chr4 (6-142)||(2302605-2302741)
chr4 (6-142)||(18749034-18749170)
chr4 (6-142)||(8515775-8515912)
chr4 (10-142)||(30230607-30230739)
chr4 (191-231)||(18749040-18749080)
[»] chr5 (6 HSPs)
chr5 (6-143)||(21803621-21803758)
chr5 (6-143)||(21723884-21724021)
chr5 (6-83)||(19589759-19589837)
chr5 (6-73)||(35794893-35794961)
chr5 (6-73)||(1643144-1643210)
chr5 (4-32)||(1643107-1643135)
[»] scaffold0094 (1 HSPs)
scaffold0094 (16-171)||(6386-6543)
[»] chr8 (2 HSPs)
chr8 (10-142)||(24251105-24251237)
chr8 (29-143)||(14330436-14330550)


Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 6 - 480
Target Start/End: Complemental strand, 13031573 - 13031098
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggtttttt-cccacaaatttcgcacggattttcttnnnnnnncaaatccgtc 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       ||||||||||    
T  13031573 caaatccatcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggtttttttcccacaaatttcgcacggattttcttaaaaaaacaaatccgtc 13031474  T
Q  105 tcaaatccgtgtgaaatattgagacggatttcggacggataataatttgaaggttttaattttatttctaatttgtgcacatttcaaattccgtcccaaa 204  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13031473 ccaaatccgtgtgaaatattgagacggatttcagacggataataatttgaaggttttaattttatttctaatttgtgcacatttcaaataccgtcccaaa 13031374  T
Q  205 tctgtctgaaatattgagacggatttcagatggaatccgacatgtagtttattatttttatttacgtgtattccgtcccaaatccgtgtgaaagtttgag 304  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13031373 tctgtctgaaatattgagacggatttcagatggaatacgagatgtagcttattatttttatttacgtgtattccgtcccaaatccgtgtgaaagtttgag 13031274  T
Q  305 acaaattttagaccatatttaacatatttttatttccgtgaattccgtcccaaatccgtgggaaactattgagacagattagacaacgtaatttatttat 404  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |    
T  13031273 acaaattttagaccatatttaacatatttttatttccatgaattccgtcccaaatccgtgggaaactattgagacagattagacaaagtaatttatctgt 13031174  T
Q  405 atataatagaattgttgtgaaagataaaccctaatgtgttaatcttgtgtgcctccttcattctctctttctaacc 480  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  13031173 atataatagaatagttgtgaaagataaaccctaatgtgttattcttgtgtgcctccttcattctctctctctaacc 13031098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 6 - 142
Target Start/End: Original strand, 15714391 - 15714527
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtct 105  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||| ||||||||||||||||  ||       ||||| ||||     
T  15714391 caaatccgtcccaaaatcgtgtgaaatttttatgacatgttcaaaaaggtttttttcccacgaatttcgcacggatttcattaaaaaaacaaattcgtcc 15714490  T
Q  106 caaatccgtgtgaaatattgagacggatttcggacgg 142  Q
    |||||||||||||||||||||||||| ||||||||||    
T  15714491 caaatccgtgtgaaatattgagacggttttcggacgg 15714527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 15260271 - 15260135
Alignment:
Q  7 aaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtctc 106  Q
    |||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||| ||||||||||| ||||||||       |||||| ||| |    
T  15260271 aaatccgtcccaaaatcgtgtgaaaattttatgacatgttcaaacattgttttttcccacgaatttcgcacgaattttcttaaaaaaacaaatctgtccc 15260172  T
Q  107 aaatccgtgtgaaatattgagacggatttcggacgga 143  Q
    ||| |||||||||| |||||||| |||||| ||||||    
T  15260171 aaaaccgtgtgaaacattgagaccgatttcagacgga 15260135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 19022093 - 19021957
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtct 105  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||||| ||||||||| ||||||  ||       ||| ||||||     
T  19022093 caaatccgtcccaaaatcgtgtgaaaattgcatgacatgttcaaacagggttttttcccacgaatttcgcatggatttcttttaaaaaacaattccgtcc 19021994  T
Q  106 caaatccgtgtgaaatattgagacggatttcggacgg 142  Q
    |||| ||||||||||||||||||||||||||||||||    
T  19021993 caaaaccgtgtgaaatattgagacggatttcggacgg 19021957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 17720864 - 17720728
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtct 105  Q
    |||||| |||||||||||||||||||  |  |||||||||||||||| ||||||||||||| ||||||||| ||||||  ||       ||| ||||||     
T  17720864 caaatcngtcccaaaatcgtgtgaaaattgcatgacatgttcaaacagggttttttcccacgaatttcgcatggatttcttttaaaaaacaattccgtcc 17720765  T
Q  106 caaatccgtgtgaaatattgagacggatttcggacgg 142  Q
    |||| ||||||||||||||||||||||||||||||||    
T  17720764 caaaaccgtgtgaaatattgagacggatttcggacgg 17720728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 4175985 - 4175917
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcg 74  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||| |||||||    
T  4175985 caaatccgtcccaaaatcgtgtgaaatttttatgacatgttcaaaaaggtttttttcccacgaatttcg 4175917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 4175907 - 4175860
Alignment:
Q  95 caaatccgtctcaaatccgtgtgaaatattgagacggatttcggacgg 142  Q
    |||||| ||| |||||||||| ||||||||||||||| ||||||||||    
T  4175907 caaatctgtcccaaatccgtgggaaatattgagacggttttcggacgg 4175860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 17720774 - 17720734
Alignment:
Q  191 aattccgtcccaaatctgtctgaaatattgagacggatttc 231  Q
    |||||||||||||| | || |||||||||||||||||||||    
T  17720774 aattccgtcccaaaaccgtgtgaaatattgagacggatttc 17720734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 19022003 - 19021963
Alignment:
Q  191 aattccgtcccaaatctgtctgaaatattgagacggatttc 231  Q
    |||||||||||||| | || |||||||||||||||||||||    
T  19022003 aattccgtcccaaaaccgtgtgaaatattgagacggatttc 19021963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 6 - 409
Target Start/End: Original strand, 12431616 - 12432024
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggtttttt--cccacaaatttcgcacggattttcttnnnnnnn-caaatccg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||| |||        ||||||||    
T  12431616 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttttcccacaaatttcgcatggatttccttaaaaaaaacaaatccg 12431715  T
Q  103 tctcaaatccgtgtgaaatattgagacggatttcggacggataataatttgaaggttttaattttatttctaatttgtgcacatttcaaattccgtccca 202  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12431716 tcccaaatccatgtgaaatattgagacggatttcggacggataataatttgaaggttttaattttatttctaatttgtgcacatttcaaataccgtccca 12431815  T
Q  203 aatctgtctgaaatattgagacggatttcagatggaatccgacatgtagtttattatttttatttacgtgtattccgtcccaaatccgtgtgaaagtttg 302  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12431816 aatctgtctgaaatattgagacggatttcagatggaatacgagatgtagcttattatttttatttacgtgtattccgtcccaaatccgtgtgaaagtttg 12431915  T
Q  303 agacaaattttagaccatatttaacatatttttatttccgtgaattccgtcccaaatccgtgggaaactattgagacagatt--agacaacgtaatttat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    |||| |||||||||    
T  12431916 agacaaattttagaccatatttaacatatttttatttccgtgaattccgtcccaaattcgtgggaaactattgagacagatttctaacaaagtaatttat 12432015  T
Q  401 ttatatata 409  Q
    |||||||||    
T  12432016 ttatatata 12432024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 407 - 480
Target Start/End: Original strand, 12432787 - 12432860
Alignment:
Q  407 ataatagaattgttgtgaaagataaaccctaatgtgttaatcttgtgtgcctccttcattctctctttctaacc 480  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12432787 ataatagaatagttgtgaaagataaaccctaatgtgttaatcttgtgtgcctccttcattctctctctctaacc 12432860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 299 - 472
Target Start/End: Complemental strand, 23002689 - 23002514
Alignment:
Q  299 tttgagacaaattttagaccatatttaacatatttttatttccgtgaattccgtcccaaatccgtgggaaactattgagacagatt--agacaacgtaat 396  Q
    |||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| ||| |||  || ||| |||||    
T  23002689 tttgggacaaattttagaccatatttaacctagttttatttccgtgaattccgtcccaaatccgtgggaaacgattgaaacaaattccagtcaaagtaat 23002590  T
Q  397 ttatttatatataatagaattgttgtgaaagataaaccctaatgtgttaatcttgtgtgcctccttcattctctct 472  Q
    |||||| ||||||||||| | ||||| |||||| |||||||||||||||||||||||  |||||||||||| ||||    
T  23002589 ttatttctatataatagagtagttgttaaagatgaaccctaatgtgttaatcttgtgctcctccttcattcgctct 23002514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 31139926 - 31140057
Alignment:
Q  12 cgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtctcaaatc 111  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||       |||||||||  |||| |    
T  31139926 cgtcccaaaatcgtgtgaaaaatttatgacatgttcaaacatggttttttcccacgaatttcgcacgaatttccttaaaaaaacaaatccgttccaaaac 31140025  T
Q  112 cgtgtgaaatattgagacggatttcggacgga 143  Q
    ||||||||| ||||||||||||||| ||||||    
T  31140026 cgtgtgaaacattgagacggatttcagacgga 31140057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 39286220 - 39286357
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtct 105  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||  |||||||||||| ||||||||||| |||| |||       ||||||||||     
T  39286220 caaatccgtcccaaaatcgtgtgaaaattttataacatgttcaaacattgttttttcccacgaatttcgcacgaatttccttaaaaaaacaaatccgtcc 39286319  T
Q  106 caaatccgtgtgaaatattgagacggatttcggacgga 143  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  39286320 caaaaccgtgtgaaacattgagacggatttcggacgga 39286357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 13937196 - 13937326
Alignment:
Q  13 gtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtctcaaatcc 112  Q
    |||||||||||||||||||  ||||| |||||||||||||  |||||||||||| ||||||||||| |||| |||       |||||||||| |||| ||    
T  13937196 gtcccaaaatcgtgtgaaaattttataacatgttcaaacattgttttttcccacgaatttcgcacgaatttccttaaaaaaacaaatccgtcccaaaacc 13937295  T
Q  113 gtgtgaaatattgagacggatttcggacgga 143  Q
    || ||||| ||||||||||||||| ||||||    
T  13937296 gtatgaaacattgagacggatttcagacgga 13937326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 17218829 - 17218765
Alignment:
Q  106 caaatccgtgtgaaatattgagacggatttcggacggataataatttgaaggttttaattttattt 171  Q
    ||||||||||||| || |||||||||||||| ||||  |||| |||||| ||||||||||||||||    
T  17218829 caaatccgtgtgatattttgagacggatttcagacgactaat-atttgagggttttaattttattt 17218765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 9987133 - 9987187
Alignment:
Q  29 aaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattt 83  Q
    |||| ||||| |||||||||||||||| |||||||||  ||||||||||| ||||    
T  9987133 aaatttttataacatgttcaaacaaggatttttcccatgaatttcgcacgaattt 9987187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 5212646 - 5212686
Alignment:
Q  12 cgtcccaaaatcgtgtgaaatatttatgacatgttcaaaca 52  Q
    ||||||||||||||||||||  ||||| |||||||||||||    
T  5212646 cgtcccaaaatcgtgtgaaaattttataacatgttcaaaca 5212686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 142
Target Start/End: Original strand, 30774767 - 30774903
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtct 105  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |   ||||||||||| ||||||||||||||||  ||       ||||| ||||     
T  30774767 caaatccgtcccaaaatcgtgtgaaatttttatgacatgttcaaaaagctttttttcccacgaatttcgcacggatttcattaaaaaaacaaattcgtcc 30774866  T
Q  106 caaatccgtgtgaaatattgagacggatttcggacgg 142  Q
    |||||||||||||||||||||||||| ||||||||||    
T  30774867 caaatccgtgtgaaatattgagacggttttcggacgg 30774903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 6 - 142
Target Start/End: Original strand, 23246294 - 23246430
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtct 105  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||||| |||||||||| |||||  ||       ||| ||||||     
T  23246294 caaatccgtcccaaaatcgtgtgaaaattgcatgacatgttcaaacagggttttttcccacgaatttcgcacagatttctttaaaaaaacaattccgtcc 23246393  T
Q  106 caaatccgtgtgaaatattgagacggatttcggacgg 142  Q
     ||| ||||||||||||||||||||||||||||||||    
T  23246394 taaaaccgtgtgaaatattgagacggatttcggacgg 23246430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 2302741 - 2302605
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtct 105  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||| | | ||||||||||| ||||||||||||||||  ||       ||||| ||||     
T  2302741 caaatccgtcctaaaatcgtgtgaaagttttatgacatgttcaaaaaggtttttttcccacgaatttcgcacggatttcattaaaaaaacaaattcgtcc 2302642  T
Q  106 caaatccgtgtgaaatattgagacggatttcggacgg 142  Q
    |||||||||||||||||||||||||| ||||||||||    
T  2302641 caaatccgtgtgaaatattgagacggttttcggacgg 2302605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 18749170 - 18749034
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtct 105  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||||| ||||||||| ||||||  ||       ||| ||||||     
T  18749170 caaatccgtcccaaaatcgtgtgaaaattgcatgacatgttcaaacagggttttttcccacgaatttcgcatggatttcttttaaaaaacaattccgtcc 18749071  T
Q  106 caaatccgtgtgaaatattgagacggatttcggacgg 142  Q
    |||| ||||||||||||||||||||||||||||||||    
T  18749070 caaaaccgtgtgaaatattgagacggatttcggacgg 18749034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 8515912 - 8515775
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaagg--ttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgt 103  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| ||||  ||||||||||| ||||||||||||||||  ||       |||||||||    
T  8515912 caaatccgtcccaaaatcgtgtgaactttttatgacatgttcaaa-aaggttttttttcccacgaatttcgcacggatttcgttaaaaatacaaatccgt 8515814  T
Q  104 ctcaaatccgtgtgaaatattgagacggatttcggacgg 142  Q
    | |||||||||||||||||||||||||| ||| ||||||    
T  8515813 cccaaatccgtgtgaaatattgagacggtttttggacgg 8515775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 30230607 - 30230739
Alignment:
Q  10 tccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtctcaaa 109  Q
    ||||||||||| ||||||||||  || |||||||||||||||||||||||||||||| ||||||||||  | ||  ||       |||||||||| || |    
T  30230607 tccgtcccaaattcgtgtgaaaatttcatgacatgttcaaacaaggttttttcccacgaatttcgcacataattctttaaaaaaacaaatccgtcccaga 30230706  T
Q  110 tccgtgtgaaatattgagacggatttcggacgg 142  Q
    | |||||||||||||||||||||||||||||||    
T  30230707 ttcgtgtgaaatattgagacggatttcggacgg 30230739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 18749080 - 18749040
Alignment:
Q  191 aattccgtcccaaatctgtctgaaatattgagacggatttc 231  Q
    |||||||||||||| | || |||||||||||||||||||||    
T  18749080 aattccgtcccaaaaccgtgtgaaatattgagacggatttc 18749040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 21803621 - 21803758
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtct 105  Q
    |||||||||||||||||||| |||||| ||||| |||| |||||||||||  ||||||||  ||||||||||| |||| |||       ||||||||||     
T  21803621 caaatccgtcccaaaatcgtatgaaatttttataacatattcaaacaaggaattttcccatgaatttcgcacgaatttccttaaaaaaacaaatccgtcc 21803720  T
Q  106 caaatccgtgtgaaatattgagacggatttcggacgga 143  Q
    |||| ||||||||||| |||||| ||||||||||||||    
T  21803721 caaaaccgtgtgaaattttgagatggatttcggacgga 21803758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 21723884 - 21724021
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtct 105  Q
    ||||||||| |||||||||| |||||| ||||| |||| |||||||||||  ||||||||  ||||||||||| |||| |||       ||||||||||     
T  21723884 caaatccgttccaaaatcgtatgaaatttttataacatattcaaacaaggaattttcccatgaatttcgcacgaatttccttaaaaaaacaaatccgtcc 21723983  T
Q  106 caaatccgtgtgaaatattgagacggatttcggacgga 143  Q
    |||| ||||||||||| |||||| ||||||||||||||    
T  21723984 caaaaccgtgtgaaattttgagatggatttcggacgga 21724021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 19589837 - 19589759
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaac-aaggttttttcccacaaatttcgcacggattt 83  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||| ||| |||||| | |||||||||||||| ||||    
T  19589837 caaatccgtcccaaaatcgtgtgaaacttttatgacatgttccaacaaagttttttttcgacaaatttcgcacgaattt 19589759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 35794961 - 35794893
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaaca-aggttttttcccacaaatttc 73  Q
    |||||||||| |||||||||||||||| ||  ||||||||||||||| || ||||||||||||||||||    
T  35794961 caaatccgtctcaaaatcgtgtgaaattttcgtgacatgttcaaacagagtttttttcccacaaatttc 35794893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 1643210 - 1643144
Alignment:
Q  6 caaatccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttc 73  Q
    ||||||||||||||||| ||| ||||| |||||||||| ||||||||||| ||||||| || ||||||    
T  1643210 caaatccgtcccaaaat-gtgcgaaatttttatgacatattcaaacaaggatttttcctacgaatttc 1643144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 1643135 - 1643107
Alignment:
Q  4 aacaaatccgtcccaaaatcgtgtgaaat 32  Q
    |||||||||||||||||||||||||||||    
T  1643135 aacaaatccgtcccaaaatcgtgtgaaat 1643107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 6386 - 6543
Alignment:
Q  16 ccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnn---caaatccgtctcaaatcc 112  Q
    |||||||||| |||||| |||||| |||||||||||| ||| |||||| || ||||||||||  |||| |||          |||||| ||  |||||||    
T  6386 ccaaaatcgtctgaaatttttatggcatgttcaaacacggtgttttccaacgaatttcgcacaaatttccttaaaaaaaaaacaaatctgttccaaatcc 6485  T
Q  113 gtgtgaaatattgagacggatttcggacggataataatttgaaggttttaattttattt 171  Q
    ||||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  6486 gtgtgaaattttgagacggatttcggacggctaat-atttgagggttttaattttattt 6543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 24251105 - 24251237
Alignment:
Q  10 tccgtcccaaaatcgtgtgaaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtctcaaa 109  Q
    ||||||||||||||||||||||  |  |||||||||||||||| ||| ||||||||  |||||||||| |||||  ||       ||| || ||| ||||    
T  24251105 tccgtcccaaaatcgtgtgaaaattgcatgacatgttcaaacatggtcttttcccatgaatttcgcacagatttctttaaaaaaacaattctgtcccaaa 24251204  T
Q  110 tccgtgtgaaatattgagacggatttcggacgg 142  Q
     ||||||||||||||||||||||||||||||||    
T  24251205 accgtgtgaaatattgagacggatttcggacgg 24251237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 14330436 - 14330550
Alignment:
Q  29 aaatatttatgacatgttcaaacaaggttttttcccacaaatttcgcacggattttcttnnnnnnncaaatccgtctcaaatccgtgtgaaatattgaga 128  Q
    |||| ||||| |||| || ||||||||  ||||||||| ||||||||||| |||| |||       |||||| ||| |||| ||||||||||| ||||||    
T  14330436 aaatttttataacatatttaaacaaggaattttcccacgaatttcgcacgaatttccttaaaaaaacaaatctgtcccaaaaccgtgtgaaattttgaga 14330535  T
Q  129 cggatttcggacgga 143  Q
     ||||||||||||||    
T  14330536 tggatttcggacgga 14330550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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