View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3340-Insertion-6 (Length: 215)
Name: NF3340-Insertion-6
Description: NF3340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3340-Insertion-6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 46758695 - 46758902
Alignment:
| Q |
8 |
tgaagtttgtaattgaactcctgccaagatcacgatacaaacctattcatggaaaaatttccattgggtatgtggttctctctaacccctgaaaacaatt |
107 |
Q |
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| T |
46758695 |
tgaagtttataattgaacccctgccaagatcaggatacaaacctattcatggaaaaatttccattgggtatatggttctctctaacccctaaaaagaatt |
46758794 |
T |
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| Q |
108 |
catccaatctaaaaaccaaacccaaattcaatccaaggattttgttctttattttgcaatcggttcctgaaattttgggtctttatgttagtttcattat |
207 |
Q |
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| T |
46758795 |
catccaatctaaaaaccaaacccaaattcaattcaaggattttgttctttattttgcaatcgggtcttaaaattttgggtctttatgttagtttaattat |
46758894 |
T |
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| Q |
208 |
ttgatgtc |
215 |
Q |
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| T |
46758895 |
ttgatgtc |
46758902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 42369995 - 42370199
Alignment:
| Q |
8 |
tgaagtttgtaattgaactcctgccaagatcacgatacaaacctattcatggaaaaatttccattgggtatgtggttctctctaacccctgaaaacaatt |
107 |
Q |
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| T |
42369995 |
tgaagtttgtaattgatcccca-ccaagaacacgataaaaaactatt-atggcaaaaattccattgggtctgtggttctctctaacccccgaaagaaatt |
42370092 |
T |
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| Q |
108 |
catccaatctaaaaaccaaacccaaattcaatccaaggattttgttctttattttgcaatcggttcctgaaattttgggtctttatgt--tagtttcatt |
205 |
Q |
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| T |
42370093 |
cctccaatctaaaatccaaacccaaattcaatccaaggattttgttctttattttgtgattggttcttgaaattttgagtctttatgttatagtttcatt |
42370192 |
T |
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| Q |
206 |
atttgat |
212 |
Q |
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| T |
42370193 |
atttgat |
42370199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 15183796 - 15183703
Alignment:
| Q |
119 |
aaaaccaaacccaaattcaatccaaggattttgttctttattttgcaatcggttcctgaaattttgggtctttatgttagtttcattatttgat |
212 |
Q |
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| T |
15183796 |
aaaaccaaacttaaatgtaatccaaagttttatttctttattttgcaattcgtttctgggattttgggtccttacgttagtttcattatttgat |
15183703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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