View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3340R-Insertion-1 (Length: 1120)
Name: NF3340R-Insertion-1
Description: NF3340R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3340R-Insertion-1 |
 | |
|
| [»] scaffold0087 (10 HSPs) |
| | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 614; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 10 - 824
Target Start/End: Complemental strand, 5164362 - 5163565
Alignment:
| Q |
10 |
attgcccccacttataaacacacattcatgccatcttttatc-gatgcaggactcttttgtcccataccatctgcatcttttatggaggtcacgtaaacg |
108 |
Q |
| |
|
|||| ||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5164362 |
attgtccccatttataaacacacattcataccatcttttatccgatgcaggacttttttgttccataccatccgcatcttttatggaggtcacgtaaacg |
5164263 |
T |
|
| Q |
109 |
ttcaaagctgcaaaaaatcaaacccagtcaagtatttgcttagacctggcaataaattaggtccctaatatagcaacaatcggagtatcgaataaagtcg |
208 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5164262 |
tttaaagctgcaaaaaatcaaacccggtcaagtatttgcttagacctggcaataaattaggtccctaatatagcaacaatcggagtgtcgaataaagtcg |
5164163 |
T |
|
| Q |
209 |
atacatttgataaagatagattcgttgatgagataaaacaatactataattgcaaatatgttttgaggctgctttgcgaatttttgcttctaaaattcat |
308 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5164162 |
atacatttcataaagatagattcgttgatgagataaaacaatactataattgcaaatatgttttgaggctgctttgcgaatttttgcttctaaaattcat |
5164063 |
T |
|
| Q |
309 |
tataatagttttttgtatgnnnnnnnntacataatttatgtaaattaaaaaatctgaaattcgagtccgtacttggct-gagttcacaaacttagttttc |
407 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||||| |||| || |||||||||||| |||||||| |
|
|
| T |
5164062 |
tataatagttttttgtatgaaaaaaaatacataatttaaataaataaaaaaatctgaaattctagtccgtgcttgactcgagttcacaaac-tagttttc |
5163964 |
T |
|
| Q |
408 |
aataaatacaagagaaaaagagacaaagccgttaaagagaccaatccctaagctaacataaaacccaatggttatgagcttatcttcattcttcatctac |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5163963 |
aataaatacaagagaaaaagagacaaagccgttaaagagaccaagccctaagctaacataaaacccaatggttatgagcttatcttcattcttcatctac |
5163864 |
T |
|
| Q |
508 |
actggtaacatgtgtgtcatggctatctccagggcgaagatttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatca |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5163863 |
actggtaacatgtgtgtcatggctatctccagggcaaagatttatgagtggctgtccacaaagtcattcataactgttcccgacatatgcagagggatca |
5163764 |
T |
|
| Q |
608 |
aaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggca |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
5163763 |
aaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaa------------------aagaaatgtcaaatttgaaaagtttgttggca |
5163682 |
T |
|
| Q |
708 |
ttttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaag |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
5163681 |
ttttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgaccaatgttgttgggaatgaatcctgtgagaatattccctaaaag |
5163582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 584 - 834
Target Start/End: Original strand, 5889108 - 5889358
Alignment:
| Q |
584 |
ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg |
683 |
Q |
| |
|
||||| || |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5889108 |
ttccccacgtatgtagaaggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttattgaaagacaagttcatgtaactaagaaatg |
5889207 |
T |
|
| Q |
684 |
tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaa |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| || |
|
|
| T |
5889208 |
tcaaatttgaaaagcttgttggcattttacccgaaagatggtttcttgacaagtcgagtgattccaacatttccatatgaccaatgtttttgggaattaa |
5889307 |
T |
|
| Q |
784 |
tcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
834 |
Q |
| |
|
|| ||||||| ||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
5889308 |
tcctgtgagatgatttcctgaaaggttcaaatcaactaataccacaagttt |
5889358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 5e-99
Query Start/End: Original strand, 536 - 834
Target Start/End: Complemental strand, 5884143 - 5883851
Alignment:
| Q |
536 |
ccagggcgaagatttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaa |
635 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| | || |||| ||||||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
5884143 |
ccagggcaaagatttatgagcggttgtccacaaagtcgattat------tccccacatatgaagaggaatcaaaagtttgtagttgagtgcttagtggaa |
5884050 |
T |
|
| Q |
636 |
ttttgccttctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaa |
735 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
5884049 |
ttttgccttctaagttgttgaacgacaggttcatgtaaccaagaaatgtcaaatttgaaaagcttgttggcattctacccgaaagatggtttcttgacaa |
5883950 |
T |
|
| Q |
736 |
gtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
834 |
Q |
| |
|
||| |||||||| |||||||||||||||| ||||||||||||||| | || ||||||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
5883949 |
gtcaagtgattctaacattttcatatgaccaatgttgttgggaatcattcctgtgagattattccctgaaaggtttaaaccaactaatgcaacaagttt |
5883851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 544 - 815
Target Start/End: Complemental strand, 5853974 - 5853709
Alignment:
| Q |
544 |
aagatttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgcct |
643 |
Q |
| |
|
|||||||||||||||| |||||||||||| | || |||| ||||||| | ||| |||||||| |||||| |||||||||| ||||||||||||| |
|
|
| T |
5853974 |
aagatttatgagtggtggtccacaaagtcgattat------tccccacatatgaataggaatcaaaagtttgtagctgagtgcttattggaattttgcct |
5853881 |
T |
|
| Q |
644 |
tctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtg |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| | |
|
|
| T |
5853880 |
tctaagttgttgaaagacaagttcatgtaactaagagatgttaaatttgaaaagcttgttggcattctaccagaaagatggtttcttgacaaatcgagcg |
5853781 |
T |
|
| Q |
744 |
attccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaac |
815 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||||| |||| ||||||| |||||| |||||||||||||| |
|
|
| T |
5853780 |
attctaacattttcatatgaccaatgttattgggaattaatcctgtgagattattccttgaaaggtttaaac |
5853709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 544 - 834
Target Start/End: Complemental strand, 5881419 - 5881135
Alignment:
| Q |
544 |
aagatttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgcct |
643 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||| | |||||||||||| ||| |
|
|
| T |
5881419 |
aagatttatgagtggctgtccacaaagtcc------actgttccccacatatgcagagggatgaaaagtttgtagttgagtacctagtggaattttccct |
5881326 |
T |
|
| Q |
644 |
tctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtg |
743 |
Q |
| |
|
||||| |||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||||| | || |
|
|
| T |
5881325 |
tctaaattgttgaacgacaggttcatgtaaccaagaaatgtcaaacttgaaaagcttgttggcattttaccgtagagatgatttcttgacaagtccaatg |
5881226 |
T |
|
| Q |
744 |
attccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
834 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||||| |||| ||||||| ||| |||||||||| ||||||||||||| |||| ||||| |
|
|
| T |
5881225 |
attctaacattttcatatgaccaatgtttttgggaattaatcctgtgagatgatttcctgaaaggtctaaaccaactaatgccacgagttt |
5881135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 580 - 828
Target Start/End: Complemental strand, 5821671 - 5821423
Alignment:
| Q |
580 |
actgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaaga |
679 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||||||||| |||| |
|
|
| T |
5821671 |
actgttccccacatatgaagatggatcaaaagtttgtagttgagtgcttagtggaattttcccttctaaattgttgaatgacaggttcatgtaaccaaga |
5821572 |
T |
|
| Q |
680 |
aatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaa |
779 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||||| | |||||| || ||| |||||||| ||||||| | |||| |
|
|
| T |
5821571 |
aatgtcaaacttgaaaagcttgttggcattttaccgtagagatgatttcttgacaagtccaatgattctaaactttccatatgaccaatgttgctaggaa |
5821472 |
T |
|
| Q |
780 |
tgaatcttgtgagaatattccctgaaaggtttaaaccaactaataccac |
828 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
5821471 |
tgaatcctgtgagattattccttgaaaggtttaaaccaactaataccac |
5821423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 140; E-Value: 9e-73
Query Start/End: Original strand, 544 - 814
Target Start/End: Complemental strand, 5831033 - 5830769
Alignment:
| Q |
544 |
aagatttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgcct |
643 |
Q |
| |
|
|||||||||||||||| |||||||||||| | || |||| ||||||| | ||| |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
5831033 |
aagatttatgagtggtggtccacaaagtcgattat------tccccacatatgaataggaatcaaaagtttgtagttgagtgcttactggaattttgccg |
5830940 |
T |
|
| Q |
644 |
tctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtg |
743 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
5830939 |
tctaagttattgaaagacaagttcatgttattaagaaatgtcaaatttgaaaagctcgttggcattctaccagaaagatggtttcttgacaagtcgagtg |
5830840 |
T |
|
| Q |
744 |
attccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaa |
814 |
Q |
| |
|
|||| ||| ||| |||||||| ||||||| | ||||||| || ||||||| |||||| ||||||||||||| |
|
|
| T |
5830839 |
attctaacctttccatatgaccaatgttgctaggaatgattcctgtgagattattccttgaaaggtttaaa |
5830769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 135; E-Value: 9e-70
Query Start/End: Original strand, 584 - 834
Target Start/End: Complemental strand, 5762106 - 5761857
Alignment:
| Q |
584 |
ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg |
683 |
Q |
| |
|
||||| ||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
5762106 |
ttcccaacatatgatgaggggccaaaagtttgtagttgagtgcttatgggaatattgccttctaagttgttgaaa-acaagttcatgtgactaagaaatg |
5762008 |
T |
|
| Q |
684 |
tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaa |
783 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||||| | ||||| || |
|
|
| T |
5762007 |
tcaaatttgaaaagcttgttggcattctacctgaaagatggtttattgacaagtcgagtgattgtaaacttttcatatgaccaatgttgctaggaataaa |
5761908 |
T |
|
| Q |
784 |
tcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
834 |
Q |
| |
|
|| ||||||| |||||| ||||||||||||| || ||||| |||| ||||| |
|
|
| T |
5761907 |
tcctgtgagattattccatgaaaggtttaaagcagctaatgccacgagttt |
5761857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 654 - 772
Target Start/End: Original strand, 2715409 - 2715531
Alignment:
| Q |
654 |
tgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttg----acaagtcgagtgattcca |
749 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| | |||||||||||||||| ||| |||||| ||||||| | |||||||| ||||| | |
|
|
| T |
2715409 |
tgaaagacaagttcatgtaacttatgaatgtcaaattagcaaagcttgttggcattctacaataaagataatttcttgatatataagtcgagcgattcta |
2715508 |
T |
|
| Q |
750 |
acattttcatatgacaaatgttg |
772 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2715509 |
acattttcatatgacaaatgttg |
2715531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 447 - 496
Target Start/End: Complemental strand, 5881527 - 5881478
Alignment:
| Q |
447 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
496 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5881527 |
accaatcaccaagctaacataaaacccaatggttatgagcttatcttcat |
5881478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 447 - 505
Target Start/End: Complemental strand, 5884243 - 5884186
Alignment:
| Q |
447 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcattcttcatct |
505 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
5884243 |
accaagccctaaggtaacataaaacccaaaggttatgagcttatcttca-tcttcatct |
5884186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 447 - 496
Target Start/End: Complemental strand, 5762242 - 5762193
Alignment:
| Q |
447 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
496 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5762242 |
accaatcaccaagctaacataaaacccaaaggttatgagcttatcttcat |
5762193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 457 - 496
Target Start/End: Complemental strand, 5831134 - 5831095
Alignment:
| Q |
457 |
aagctaacataaaacccaatggttatgagcttatcttcat |
496 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5831134 |
aagctaacataaaacccaaaggttatgagcttatcttcat |
5831095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 457 - 496
Target Start/End: Complemental strand, 5854075 - 5854036
Alignment:
| Q |
457 |
aagctaacataaaacccaatggttatgagcttatcttcat |
496 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5854075 |
aagctaacataaaacccaaaggttatgagcttatcttcat |
5854036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 176; Significance: 3e-94; HSPs: 10)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 544 - 834
Target Start/End: Complemental strand, 41146 - 40862
Alignment:
| Q |
544 |
aagatttatgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgcct |
643 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41146 |
aagatttatgagtggctgtccacaaagtcc------actgttcccgacatatgtagagggatcaaaagattgtagttgagtgcttagtggaattttacct |
41053 |
T |
|
| Q |
644 |
tctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtg |
743 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| | || ||||||||||||||||||||||| |||| |
|
|
| T |
41052 |
tctaagttgttgaacgacaagttcatgtaactaagaaatgtcaaatacgaaaagcttggtggcattctcccagaaagatggtttcttgacaagtcaagtg |
40953 |
T |
|
| Q |
744 |
attccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
834 |
Q |
| |
|
|||| || ||| |||||||| ||||||||||||||| |||| ||||||| |||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
40952 |
attctaatgtttccatatgaccaatgttgttgggaattaatcctgtgagattattccttgaaaggtttaaaccagctaatgccacaagttt |
40862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 592 - 834
Target Start/End: Complemental strand, 31071 - 30829
Alignment:
| Q |
592 |
atatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaattt |
691 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31071 |
atatgtagatggatcaaaagattgtagttgagtgcttagtggaatttttccttctaagttgttgaaagacaagtccatgtaactaagaaatgtcaaattt |
30972 |
T |
|
| Q |
692 |
gaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtga |
791 |
Q |
| |
|
| ||||| ||||||||| ||||||||| ||| |||||||| ||||| |||||||| || ||| |||||||| ||||||| | |||||||||| ||||| |
|
|
| T |
30971 |
gttaagctcgttggcattctacctgaaatatgttttcttgataagtctagtgattctaatctttccatatgaccaatgttgctaggaatgaatcctgtga |
30872 |
T |
|
| Q |
792 |
gaatattccctgaaaggtttaaaccaactaataccacaagttt |
834 |
Q |
| |
|
|| |||||| |||||||||||||||| ||||| |||| ||||| |
|
|
| T |
30871 |
gattattccatgaaaggtttaaaccagctaatgccacgagttt |
30829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 591 - 834
Target Start/End: Complemental strand, 20724 - 20481
Alignment:
| Q |
591 |
catatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatt |
690 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20724 |
catatgtagatggaccaaaagattgtagttgagtgcatagtggaatttttccttctaagttgttgaaagacaagtccatgtaactaagaaatgtcaaatt |
20625 |
T |
|
| Q |
691 |
tgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtg |
790 |
Q |
| |
|
||| ||||| || |||||| |||| |||| ||| |||||||| ||||| |||||||| ||| ||| |||||||| ||||||| | |||||||||| |||| |
|
|
| T |
20624 |
tgagaagctcgtcggcattctaccagaaatatgatttcttgagaagtcaagtgattctaacctttccatatgaccaatgttgctaggaatgaatcctgtg |
20525 |
T |
|
| Q |
791 |
agaatattccctgaaaggtttaaaccaactaataccacaagttt |
834 |
Q |
| |
|
||| |||||| |||||||||||||||| ||||| |||| ||||| |
|
|
| T |
20524 |
agattattccatgaaaggtttaaaccagctaatgccacgagttt |
20481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #4
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 584 - 834
Target Start/End: Complemental strand, 13672 - 13423
Alignment:
| Q |
584 |
ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg |
683 |
Q |
| |
|
||||| ||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
13672 |
ttcccaacatatgatgaggggccaaaagtttgtagttgagtgcttatgggaatattgccttctaagttgttgaaa-acaagttcatgtgactaagaaatg |
13574 |
T |
|
| Q |
684 |
tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaa |
783 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||| | ||||| || |
|
|
| T |
13573 |
tcaaatttgaaaagcttgttggcattctacctgaaagatggtttcttgacaagtcgagtgattgtaaactttccatatgaccaatgttgctaggaataaa |
13474 |
T |
|
| Q |
784 |
tcttgtgagaatattccctgaaaggtttaaaccaactaataccacaagttt |
834 |
Q |
| |
|
|| | ||||| |||||| ||||||||| ||| || ||||| |||| ||||| |
|
|
| T |
13473 |
tcctttgagattattccatgaaaggttgaaagcagctaatgccacgagttt |
13423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #5
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 584 - 814
Target Start/End: Complemental strand, 35070 - 34841
Alignment:
| Q |
584 |
ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg |
683 |
Q |
| |
|
||||| ||||||| | ||| ||||||| ||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||| | ||||| ||| |
|
|
| T |
35070 |
ttccccacatatgaataggaatcaaaat-ttgtagttgagtgcttactggaattttgtcgtctaagttattgaaagacaagttcatgttattaagagatg |
34972 |
T |
|
| Q |
684 |
tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaa |
783 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||| |||||||| ||| ||| | ||||||| |
|
|
| T |
34971 |
tcaaatttgaaaagctcgttggcattctaccagaaagatggtttcttgacaagtcgagtgattctaacctttccatatgaccaattttgctaggaatgat |
34872 |
T |
|
| Q |
784 |
tcttgtgagaatattccctgaaaggtttaaa |
814 |
Q |
| |
|
|| ||||||| |||||| ||||||||||||| |
|
|
| T |
34871 |
tcctgtgagattattccttgaaaggtttaaa |
34841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 447 - 496
Target Start/End: Complemental strand, 41254 - 41205
Alignment:
| Q |
447 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
496 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41254 |
accaatcaccaagctaacataaaacccaatggttatgagcttatcttcat |
41205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 447 - 496
Target Start/End: Complemental strand, 13808 - 13759
Alignment:
| Q |
447 |
accaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
496 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13808 |
accaatcaccaagctaacataaaacccaaaggttatgagcttatcttcat |
13759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 20872 - 20824
Alignment:
| Q |
448 |
ccaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
496 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
20872 |
ccaagccccaagctaacataaaacccaaaggttattagcttatcttcat |
20824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 31220 - 31172
Alignment:
| Q |
448 |
ccaatccctaagctaacataaaacccaatggttatgagcttatcttcat |
496 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
31220 |
ccaagccccaagctaacataaaacccaaaggttattagcttatcttcat |
31172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 457 - 496
Target Start/End: Complemental strand, 35203 - 35164
Alignment:
| Q |
457 |
aagctaacataaaacccaatggttatgagcttatcttcat |
496 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35203 |
aagctaacataaaacccaaatgttatgagcttatcttcat |
35164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 47849599 - 47849557
Alignment:
| Q |
9 |
gattgcccccacttataaacacacattcatgccatcttttatc |
51 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
47849599 |
gattgccccaacttataaacacatgttcatgccatcttttatc |
47849557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 40898771 - 40898812
Alignment:
| Q |
9 |
gattgcccccacttataaacacacattcatgccatcttttat |
50 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
40898771 |
gattgcccccacttataaacacatatttatgtcatcttttat |
40898812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 67513 - 67472
Alignment:
| Q |
9 |
gattgcccccacttataaacacacattcatgccatcttttat |
50 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
67513 |
gattgcccccacttataaacacatatttatgtcatcttttat |
67472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 794451 - 794414
Alignment:
| Q |
10 |
attgcccccacttataaacacacattcatgccatcttt |
47 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
794451 |
attgcctccacttataaacacacattcataccatcttt |
794414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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