View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3340R-Insertion-3 (Length: 387)
Name: NF3340R-Insertion-3
Description: NF3340R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3340R-Insertion-3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 387
Target Start/End: Original strand, 34797216 - 34797593
Alignment:
| Q |
9 |
ggtgggattccctaagaagaaatgaaagcatgcctgaacatctggtggacgcgtgtaagaggtgtgctcgagcatttataagggctgaatttcaggtatg |
108 |
Q |
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| T |
34797216 |
ggtgggattccctaagaagaaatgaaagcatgcctgaacatctagtggacgcgtgtaagaggtgtgctcgagcatttataagggccgaatttcaggtatg |
34797315 |
T |
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| Q |
109 |
ctttgttccacctataactattcaggcaaattttaggtatgctttgagaatgattatctattgatcattgtcattggcttggctgtctactagattaaat |
208 |
Q |
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| T |
34797316 |
ctttgttccacctataactattcaggcaaattttaggtatgctttgagaatgattatctattgatcattgtcattggcttggctgtctactatattaaat |
34797415 |
T |
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| Q |
209 |
gaatgctttgattttatatcaattataagatagaaggtgatgctatcnnnnnnntttatcacctcttgcctactaaattaaacacaaatgaaactaacat |
308 |
Q |
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| T |
34797416 |
gaatgctttgattttatatcaattataagatagaaggtgatgctcacaaaaaaatttatcacctcttgcctactaaattaaacacaaatgaaactaacat |
34797515 |
T |
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| Q |
309 |
tggtgcgataagnnnnnnnnnccataggttatgtatttattgcacctataaactgaggaagggagaaaaagcataattg |
387 |
Q |
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| T |
34797516 |
tggtgcgataag-aaaaaaaaccataggttatgtatttattgcacctataaactgaggaagggagaaaaagcataattg |
34797593 |
T |
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