View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3340R-Insertion-4 (Length: 344)
Name: NF3340R-Insertion-4
Description: NF3340R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3340R-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 53310998 - 53311309
Alignment:
| Q |
8 |
aaatcaatcattcatttctctcttattccctcttttggtatgctttgtttgaatattttaaaacaactgacccagagtagaatgaaatgtaattatcact |
107 |
Q |
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| T |
53310998 |
aaatcaatcattcatttctctcttactccctcttttggtatgctttgtttgaat-----------------ccagagtagaatgaaatgtaattatcact |
53311080 |
T |
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| Q |
108 |
ctattttttggataggaaaatgcttaccataacaacaaatagtatcacgatcgaggagattacatacaatagaatcaatagcactgcacacttgaaagtt |
207 |
Q |
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| T |
53311081 |
ctattttttggacaggaaaatgcttaccataacaacaaatagtatcacga----ggagattacatacaatagaatcaatagcactgcacacttgaaagtt |
53311176 |
T |
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| Q |
208 |
tgaccttaataacacccattacctccttcttttccagccataacaggttttaattggtgcaaattcatgagaaattcgggataaaacaaacacctcgcag |
307 |
Q |
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| T |
53311177 |
tgaccttaataacacccattacctccttcttttccggccataacaggttttaattggtacaaattcatgagagattcgggata----aaacacctcgcag |
53311272 |
T |
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| Q |
308 |
ctttatattctatgatagagtgaaataaagttcacat |
344 |
Q |
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| T |
53311273 |
ctttatattctatgatagagtgaaataaagttcacat |
53311309 |
T |
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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 9009628 - 9009701
Alignment:
| Q |
192 |
tgcacacttgaaagtttgaccttaataacacccattacctccttcttttccagccataacaggttttaattggt |
265 |
Q |
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| T |
9009628 |
tgcacacttgaaagtttgaccataataacacccacaacctccttgttttccggccataacaagttttacttggt |
9009701 |
T |
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