View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3340R-Insertion-5 (Length: 170)
Name: NF3340R-Insertion-5
Description: NF3340R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3340R-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 4e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 31464671 - 31464832
Alignment:
| Q |
9 |
gagattcctcgagttttctacaatgaataactatatccacctttgattatactatcttccttttaataattacaaatatactttctcacctatttaatgg |
108 |
Q |
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| T |
31464671 |
gagatccctcgaattttctacgatgcataactatatccacctttgattatactatcttcctttttattattacaaacatactttctcacctatttaatgg |
31464770 |
T |
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| Q |
109 |
aggacttagattacacatgagat--nnnnnnnnccggagacaatctccaccccactttctca |
168 |
Q |
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| T |
31464771 |
aggacttagattacacatgagataaaaaaaaaaccggagacaatctccaccccactttctca |
31464832 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 30390261 - 30390297
Alignment:
| Q |
94 |
tcacctatttaatggaggacttagattacacatgaga |
130 |
Q |
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| T |
30390261 |
tcacctatttaatggagggcttagattacacatgaga |
30390297 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 48084436 - 48084387
Alignment:
| Q |
77 |
attacaaatatactttctcacctatttaatggaggacttagattacacat |
126 |
Q |
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| T |
48084436 |
attacaaacacattttctaatctatttaatggaggacttagattacacat |
48084387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 5532414 - 5532477
Alignment:
| Q |
67 |
ccttttaataattacaaatatactttctcacctatttaatggaggacttagattacacatgaga |
130 |
Q |
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| T |
5532414 |
cctttttattattacaaacacattctctcacctatttaatggatggcttagattacacacgaga |
5532477 |
T |
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