View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3340_high_4 (Length: 364)
Name: NF3340_high_4
Description: NF3340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3340_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 4 - 350
Target Start/End: Complemental strand, 26657170 - 26656820
Alignment:
| Q |
4 |
gcagtaaataacatccgaggaatggaaactgatatgtccagaaaaagattaatggaacagaaacagcaaaagaacaaggagatagagagaa----ccaat |
99 |
Q |
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| T |
26657170 |
gcagtaaataacatccgaggaatggaaaatgatatgtcaagaaaaagattaatagaacagaaacagcaaaagaacaaggagatagagagaaagaaccaat |
26657071 |
T |
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| Q |
100 |
aatgtaactaacaaggctttccagcatattaaccttcaataaatggaaacactcttatgacagctatgagtattgtccaagatagaagctataaacacat |
199 |
Q |
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| T |
26657070 |
aatgtaactaacaaggctttccagcatattaaccttcaataaatggaaacactcttatgacagctatgagtattgtccaagatagaagctataaacacat |
26656971 |
T |
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| Q |
200 |
tactatgacatagcaaaatttaagaaaagctgctttcaaggtcaagccaggaggacactcttgtctaaccaaatacaacaccataataaaagcataaagg |
299 |
Q |
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| T |
26656970 |
tactatgacatggcaaaatttaagaaaagctgctttcaaggtcaagccaggaggacactcttgtctaaccaaatacaacaccataataaaagcataaagg |
26656871 |
T |
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| Q |
300 |
acacacaatcttccacataattttgtcacaccatgttgaaacctattaagt |
350 |
Q |
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| T |
26656870 |
acacacaaacttccacagaattttggcacaccatgttgaaacctattaagt |
26656820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 305
Target Start/End: Complemental strand, 26643537 - 26643413
Alignment:
| Q |
178 |
aagatagaagctataaacacattactatgacatagcaaaatttaagaaaagctgctttcaaggtcaagccaggaggacactcttgtctaaccaaatacaa |
277 |
Q |
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| T |
26643537 |
aagatagaagctataaacagattacaattacatagcataatctaagaaaagatgctttgaaggtcaagccag--gga-tttctggtctaaccaaatacaa |
26643441 |
T |
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| Q |
278 |
caccataataaaagcataaaggacacac |
305 |
Q |
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| T |
26643440 |
caccataataaaagcaaaaaggacacac |
26643413 |
T |
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