View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3340_low_2 (Length: 445)
Name: NF3340_low_2
Description: NF3340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3340_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 9 - 427
Target Start/End: Original strand, 53957473 - 53957891
Alignment:
| Q |
9 |
agcagagagagttaggatatcactagcacttgtgccattcatggctgagccaataacacttctaagatcctctttcttagctcccattgattcagctact |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957473 |
agcagtgagagttaggatatcactagcacttgtgccattcatggctgagccaataacacttctaagatcctctttcttagctcccattgattcagctact |
53957572 |
T |
|
| Q |
109 |
tttgcacactgagcagctaccaaagcagcagcagaggctattgctttctctctatcttcatttgactcnnnnnnngaattttcagaagcaattgcagcaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
53957573 |
tttgcacactgagcagctaccaaagcagcagcagaggctattgctttctctctatcttcatttgactctttttttgaattttcagaagcaattgcagcaa |
53957672 |
T |
|
| Q |
209 |
gtgctgctgcaactcctgcaatggacattgctgcatgcacatctgctctttgcaatctttgttcttctttcttcttcagctttacttccttaaaccatct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53957673 |
gtgctgctgcaactcctgcaatggacattgctgcatgcacctctgctctttgcaatctttgttcttctttcttcttcagctttacttccttaaaccattt |
53957772 |
T |
|
| Q |
309 |
ctttattgacatacttttcagtggtaatatctgcttccatggcatctacatgatatatgatggtaaataagttatactaatttcaagtgaaataactagt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53957773 |
ctttattgacatacttttcagtggtaatatctgcttccatggcatctacatgatatatgatggtaaataatttatactaatttcaagtgaaataactagt |
53957872 |
T |
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| Q |
409 |
aacgcttgcatgtaactct |
427 |
Q |
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||||||||||||||||||| |
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| T |
53957873 |
aacgcttgcatgtaactct |
53957891 |
T |
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