View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3340_low_3 (Length: 443)
Name: NF3340_low_3
Description: NF3340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3340_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 37269185 - 37268772
Alignment:
| Q |
12 |
atgaagcattagacttatatacatgtatctacttatatttcaatagggcaagtttggaaaaggctaagaaagagttatcaacaagcgtggagaagggagt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37269185 |
atgaagcattagacttatatacatgtatctacttatatttcaatagggcaagtttggaaaaggctaagaaagagttatcaacaagcgtggagaagggagt |
37269086 |
T |
|
| Q |
112 |
ttctttgtatgagtaatgctatatctagctaattaatatttcgggagacttcatcaagcatctattggggttaaacattactcaaaggcaacccaatttt |
211 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37269085 |
ttccttatatgagtaatgctatatctagctaattaatatttcgggagacttcatcaagcatctattggggttaaacattactcaaaggcaacccaatttt |
37268986 |
T |
|
| Q |
212 |
atcaacacattttttgtcaccgtgatattagtacgaagtttccactatcgtttaaacatgactaatctttgtcagaaaatctatagaacacataaggtgg |
311 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37268985 |
atcaacaca--ttttgtcaccatgatattagtacgaagtttccactatcgtttaaccatgactaatctttgtcagaaaatctatagaacacataaggtgg |
37268888 |
T |
|
| Q |
312 |
attctccccttccaaccagattttttccatttgtatgagtcggaagtcaaacctcaaacaaatacataaaaggctaaagtttctcgtcacttgaacaaat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
37268887 |
attctccccttccaaccagattttttccatttgtatgagtcggaagtcaaacctcagacaaatacataaaaggctaaagtttatggtcacttgaacaaat |
37268788 |
T |
|
| Q |
412 |
ctattgttagtatttt |
427 |
Q |
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||| |||||||||||| |
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| T |
37268787 |
ctactgttagtatttt |
37268772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 4988013 - 4987908
Alignment:
| Q |
12 |
atgaagcattagacttatatacatgtatctacttatatttcaatagggcaagtttggaaaaggctaagaaagagttatcaacaagcgtggagaagggagt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4988013 |
atgaagcattagacttatatacatgtatctacttatatttcaatagggcaagtttggaaaaggctaagaaagagttagcaacaagcgtggagaagggagt |
4987914 |
T |
|
| Q |
112 |
ttcttt |
117 |
Q |
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|||||| |
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| T |
4987913 |
ttcttt |
4987908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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