View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3340_low_4 (Length: 416)
Name: NF3340_low_4
Description: NF3340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3340_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 34797598 - 34797216
Alignment:
| Q |
15 |
aagaacaattatgctttttctcccttcctcagtttataggtgcaataaatacataacctatggnnnnnnnncttatcgcaccaatgttagtttcatttgt |
114 |
Q |
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| T |
34797598 |
aagaacaattatgctttttctcccttcctcagtttataggtgcaataaatacataacctatggttttttttcttatcgcaccaatgttagtttcatttgt |
34797499 |
T |
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| Q |
115 |
gtttaatttagtaggcaagaggtgataaannnnnnngatagcatcaccttctatcttataattgatataaaatcaaagcattcatttaatctagtagaca |
214 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34797498 |
gtttaatttagtaggcaagaggtgataaatttttttgtgagcatcaccttctatcttataattgatataaaatcaaagcattcatttaatatagtagaca |
34797399 |
T |
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| Q |
215 |
gccaagccaatgacaatgatcaatagataatcattctcaaagcatacctaaaatttgcctgaatagttataggtggaacaaagcatacctgaaattcagc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34797398 |
gccaagccaatgacaatgatcaatagataatcattctcaaagcatacctaaaatttgcctgaatagttataggtggaacaaagcatacctgaaattcggc |
34797299 |
T |
|
| Q |
315 |
ccttataaatgctcgagcacacctcttacacgcgtccaccagatgttcaggcatgctttcatttcttcttagggaatcccacc |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34797298 |
ccttataaatgctcgagcacacctcttacacgcgtccactagatgttcaggcatgctttcatttcttcttagggaatcccacc |
34797216 |
T |
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