View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3340_low_5 (Length: 373)
Name: NF3340_low_5
Description: NF3340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3340_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 19231844 - 19232021
Alignment:
| Q |
32 |
ttattattattatatagatagatagttagagaaagacaaaccaatggttccctnnnnnnn-ctaatggaaactacaaaataaaatcagagattccttcag |
130 |
Q |
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| T |
19231844 |
ttattattattatatagatagatagttagagaaagacaaaccaatggttccctaaaaataactaatggaaactacaaaataaactgagagattccttcag |
19231943 |
T |
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| Q |
131 |
tagtgtctttacatcaattctctttgttcttaattctgatttttgaaaataaaggggtataatt-attgggattttaa |
207 |
Q |
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| T |
19231944 |
tagcgtctttacatcaattctctttgttcttaattctgattttttaaaataaagggttataattgattgggattttaa |
19232021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 322
Target Start/End: Original strand, 19232193 - 19232315
Alignment:
| Q |
200 |
gattttaaagactactctgaagagnnnnnnntgagtttaaaaggatttattattgtagacatctaacatacataaagtgtctttggatatagtgttatcg |
299 |
Q |
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| T |
19232193 |
gattttaaagactactttgaagagaaaaaaatgagtttaaaaggatttgttattgtagacatctaacatacataaagtgcctttgggtgtagtgttatcg |
19232292 |
T |
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| Q |
300 |
atagatattgcatacattaaaat |
322 |
Q |
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| T |
19232293 |
atagatattgcatacattaaaat |
19232315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 19245497 - 19245635
Alignment:
| Q |
92 |
ctaatggaaactacaaaataaaatcagagattccttcagtagtgtctttacatcaattctctttgttctta------attctgatttttgaaaataaagg |
185 |
Q |
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| T |
19245497 |
ctaatggaaactacaaaataaactcagagattccttcaaaagtatctttacatcggttctctttgttcttagtctagattctaattttcaaaaataaaag |
19245596 |
T |
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| Q |
186 |
ggtataatt-attgggattttaaagactactctgaagag |
223 |
Q |
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| T |
19245597 |
ggtgtaattgattgggattttaaaggctactctgaagag |
19245635 |
T |
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