View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3341_high_2 (Length: 250)

Name: NF3341_high_2
Description: NF3341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3341_high_2
NF3341_high_2
[»] chr5 (2 HSPs)
chr5 (1-239)||(14663294-14663539)
chr5 (65-147)||(23558030-23558112)
[»] chr3 (4 HSPs)
chr3 (59-239)||(49961140-49961327)
chr3 (59-239)||(409197-409384)
chr3 (59-239)||(414558-414745)
chr3 (53-156)||(26304270-26304373)
[»] chr2 (2 HSPs)
chr2 (59-236)||(15048503-15048687)
chr2 (65-147)||(1178316-1178398)
[»] chr1 (4 HSPs)
chr1 (59-239)||(24344035-24344222)
chr1 (59-239)||(24356413-24356600)
chr1 (65-147)||(41699747-41699829)
chr1 (65-147)||(41705341-41705423)
[»] chr6 (3 HSPs)
chr6 (59-236)||(20787952-20788136)
chr6 (59-239)||(24185682-24185869)
chr6 (53-150)||(8533436-8533533)
[»] chr7 (1 HSPs)
chr7 (59-154)||(35050110-35050205)
[»] chr4 (1 HSPs)
chr4 (65-147)||(54077121-54077203)
[»] scaffold0045 (1 HSPs)
scaffold0045 (65-118)||(44318-44371)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14663539 - 14663294
Alignment:
Q  1 aagaagccaaataaatcgtcttttggggatcaaataaatcgtttatttggcatgtgtaagtctctttggctttgagtctcaattccaaaagacatttacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14663539 aagaagccaaataaatcgtcttttggggatcaaataaatcgtttatttggcatgtgtaagtctctttggctttgagtctcaattccaaaaggcatttacc 14663440  T
Q  101 aatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgtaatacatgtttcaacaaattggagggtttgtattcaatattttttgtta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  14663439 aatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgtaatacatgtttcaacaaattggagggtttggattcaatattttttatta 14663340  T
Q  201 -------taagaaagtatattacaagatgaaatacattgtgttcat 239  Q
           ||||||||||||| |||||||||||||||||||||||||    
T  14663339 caaaaagtaagaaagtatatgacaagatgaaatacattgtgttcat 14663294  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 23558030 - 23558112
Alignment:
Q  65 tttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgta 147  Q
    ||||| ||||| |||||||| |||||| ||| |||||| ||||| ||||||||| | ||| ||||| | | ||||||||||||    
T  23558030 tttggatttgaatctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgatgta 23558112  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 49961140 - 49961327
Alignment:
Q  59 agtctctttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgtaatacat 158  Q
    |||| ||||||||||||||  |||||||||||  |||||||||||||||||||  | ||  ||||||| ||||| | |||||||||||| ||| || |||    
T  49961140 agtcactttggctttgagttccaattccaaaaagcatttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcat 49961239  T
Q  159 gtttcaacaaattggagggtttgtattcaatattttttgtta-------taagaaagtatattacaagatgaaatacattgtgttcat 239  Q
    ||||||||| ||||||||||||| ||||||||||||||||||       ||||||||||||| || |||||||| | |||||||||||    
T  49961240 gtttcaacagattggagggtttggattcaatattttttgttacatagagtaagaaagtatatgaccagatgaaagatattgtgttcat 49961327  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 59 - 239
Target Start/End: Complemental strand, 409384 - 409197
Alignment:
Q  59 agtctctttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgtaatacat 158  Q
    |||| |||||||||||| |  |||||||||||  | |||||||||||||||||  | ||  ||||||| ||||| | |||||||||||| ||| || |||    
T  409384 agtcactttggctttgaattccaattccaaaaagcctttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcat 409285  T
Q  159 gtttcaacaaattggagggtttgtattcaatattttttgtta-------taagaaagtatattacaagatgaaatacattgtgttcat 239  Q
    ||||||||| |||||||| |||| |||||||||||| |||||       ||||||||||||| ||||||||||| | |||||||||||    
T  409284 gtttcaacagattggaggatttggattcaatattttctgttacagaaagtaagaaagtatatgacaagatgaaagatattgtgttcat 409197  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 414558 - 414745
Alignment:
Q  59 agtctctttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgtaatacat 158  Q
    |||| |||||||||||| |  |||||||||||  | |||||||||||||||||  | ||  ||||||| ||||| | |||||||||||| ||| || |||    
T  414558 agtcactttggctttgaattccaattccaaaaagcctttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcat 414657  T
Q  159 gtttcaacaaattggagggtttgtattcaatattttttgtta-------taagaaagtatattacaagatgaaatacattgtgttcat 239  Q
    ||||||||| |||||||| |||| |||||||||||| |||||       ||||||||||||| ||||||||||| | |||||||||||    
T  414658 gtttcaacagattggaggatttggattcaatattttctgttacagaaagtaagaaagtatatgacaagatgaaagatattgtgttcat 414745  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 26304270 - 26304373
Alignment:
Q  53 tgtgtaagtctctttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgta 152  Q
    ||||||||||  |||||||||||||| |||||||||||   ||||||||||||||| ||||||||  | ||| ||||| |||  |||||||| ||||| |    
T  26304270 tgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgcaaaattcaaagaatttcaagtagaagttgcctctatgatctattgca 26304369  T
Q  153 atac 156  Q
    ||||    
T  26304370 atac 26304373  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 59 - 236
Target Start/End: Complemental strand, 15048687 - 15048503
Alignment:
Q  59 agtctctttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgtaatacat 158  Q
    |||| ||||||||||||||  |||||||||||  |||||||||||||||||||  | ||  ||||||| ||||| | |||||||||||| ||| || |||    
T  15048687 agtcactttggctttgagttccaattccaaaaagcatttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcat 15048588  T
Q  159 gtttcaacaaattggagggtttgtattcaatattttttgtta-------taagaaagtatattacaagatgaaatacattgtgtt 236  Q
    ||||||||| ||||||||||||| |||||||||||| |||||       ||||||||||||| ||| ||||||| | ||||||||    
T  15048587 gtttcaacagattggagggtttggattcaatattttatgttacagaaagtaagaaagtatatgacacgatgaaagatattgtgtt 15048503  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 1178316 - 1178398
Alignment:
Q  65 tttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgta 147  Q
    |||||||| |||||  ||||||||||| |||||||||||||||| || ||||   | ||| | ||||||| ||||||||||||    
T  1178316 tttggcttggagtcctaattccaaaaggcatttaccaatgcaaaattgaaaggatttcaaattgaaattgcttctatgatgta 1178398  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 24344035 - 24344222
Alignment:
Q  59 agtctctttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgtaatacat 158  Q
    |||| ||||||||||||||  |||||||||||  | |||||||||||||||||  | ||  ||||||| ||||| | |||||||||||| ||| || |||    
T  24344035 agtcactttggctttgagttccaattccaaaaagcctttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcat 24344134  T
Q  159 gtttcaacaaattggagggtttgtattcaatattttttgtta-------taagaaagtatattacaagatgaaatacattgtgttcat 239  Q
    ||||||||| |||||||| |||| |||||||||||| |||||       ||||||||||||| ||||||||||| | |||||||||||    
T  24344135 gtttcaacagattggaggttttggattcaatattttctgttacagaaagtaagaaagtatatgacaagatgaaagatattgtgttcat 24344222  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 24356413 - 24356600
Alignment:
Q  59 agtctctttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgtaatacat 158  Q
    |||| |||||||||||| |  |||||||||||  | |||||||||||||||||  | ||  ||||||| ||||| | |||||||||||| ||| || |||    
T  24356413 agtcactttggctttgaattccaattccaaaaagcctttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcat 24356512  T
Q  159 gtttcaacaaattggagggtttgtattcaatattttttgtta-------taagaaagtatattacaagatgaaatacattgtgttcat 239  Q
    ||||||||| |||||||| |||| |||||||||||| |||||       ||||||| ||||| ||||||||||| | |||||||||||    
T  24356513 gtttcaacagattggaggttttggattcaatattttctgttacagaaagtaagaaattatatgacaagatgaaagatattgtgttcat 24356600  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 41699747 - 41699829
Alignment:
Q  65 tttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgta 147  Q
    ||||| ||||| |||||||| |||||| ||| |||||| ||||| ||||||||| | ||| ||||| | | ||||||||||||    
T  41699747 tttggatttgaatctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgatgta 41699829  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 41705341 - 41705423
Alignment:
Q  65 tttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgta 147  Q
    ||||| ||||| |||||||| |||||| ||| |||||| ||||| ||||||||| | ||| ||||| | | ||||||||||||    
T  41705341 tttggatttgaatctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgatgta 41705423  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 236
Target Start/End: Complemental strand, 20788136 - 20787952
Alignment:
Q  59 agtctctttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgtaatacat 158  Q
    |||| |||||| |||||||  |||||||||||  |||||||||||||||||||  | ||  ||||||| ||||| | |||||||||||| ||| || |||    
T  20788136 agtcactttggttttgagttccaattccaaaaagcatttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcat 20788037  T
Q  159 gtttcaacaaattggagggtttgtattcaatattttttgtta-------taagaaagtatattacaagatgaaatacattgtgtt 236  Q
    ||||||||| ||||||||||||| |||||||||||| |||||       ||||||||||||| ||| ||||||| | ||||||||    
T  20788036 gtttcaacagattggagggtttggattcaatattttctgttacagaaagtaagaaagtatatgacacgatgaaagatattgtgtt 20787952  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 59 - 239
Target Start/End: Complemental strand, 24185869 - 24185682
Alignment:
Q  59 agtctctttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgtaatacat 158  Q
    |||| |||||||||||| |  |||||||||||  | |||||||||||||||||  | ||  ||||||| ||||| | |||||||||||| ||| || |||    
T  24185869 agtcactttggctttgaattccaattccaaaaagcctttaccaatgcaaagtttcaggaattccaattggaaatagcttctatgatgtactgtcatgcat 24185770  T
Q  159 gtttcaacaaattggagggtttgtattcaatattttttgtta-------taagaaagtatattacaagatgaaatacattgtgttcat 239  Q
    ||||||||| ||||||||||||| |||||||||||| |||||       ||||||| ||||| ||||||||||| | |||||||||||    
T  24185769 gtttcaacagattggagggtttggattcaatattttctgttacagaaagtaagaaattatatgacaagatgaaagatattgtgttcat 24185682  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 8533533 - 8533436
Alignment:
Q  53 tgtgtaagtctctttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattg 150  Q
    ||||||||||  ||||||||||| || |||||||||||  |||||||||||||||| ||||||||  | ||| ||||| ||  |||||||||||||||    
T  8533533 tgtgtaagtcattttggctttgaatcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagtttcttctatgatgtattg 8533436  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 35050110 - 35050205
Alignment:
Q  59 agtctctttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgtaat 154  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||||| ||||||||  | ||| | ||||||| ||||||||| || ||||||    
T  35050110 agtctttttggctttgagtctcaattccaaaaagcatttaccaatgcaaaattcaaagaatttcaaattgaaattgcttctatgatttactgtaat 35050205  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 54077203 - 54077121
Alignment:
Q  65 tttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgta 147  Q
    ||||| ||||| |||||||| |||||| ||| |||||| ||||| ||||||||| | ||| ||||| | | ||||||||||||    
T  54077203 tttggatttgaatctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgatgta 54077121  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 44318 - 44371
Alignment:
Q  65 tttggctttgagtctcaattccaaaagacatttaccaatgcaaagttcaaagag 118  Q
    ||||| ||||| |||||||| |||||| ||| |||||||||||| |||||||||    
T  44318 tttggatttgaatctcaatttcaaaaggcatataccaatgcaaaattcaaagag 44371  T

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