View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3341_low_1 (Length: 991)

Name: NF3341_low_1
Description: NF3341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3341_low_1
NF3341_low_1
[»] chr4 (59 HSPs)
chr4 (22-985)||(27571052-27572014)
chr4 (178-809)||(27418996-27419621)
chr4 (499-811)||(27411379-27411690)
chr4 (204-823)||(27566870-27567485)
chr4 (487-823)||(27414212-27414550)
chr4 (492-824)||(27421841-27422176)
chr4 (492-813)||(27424432-27424755)
chr4 (570-728)||(27556384-27556542)
chr4 (204-445)||(27422210-27422448)
chr4 (571-732)||(27478884-27479045)
chr4 (571-732)||(27485944-27486105)
chr4 (619-732)||(27506724-27506837)
chr4 (618-732)||(27412689-27412803)
chr4 (577-774)||(27513735-27513932)
chr4 (199-445)||(27414562-27414809)
chr4 (620-732)||(27444795-27444907)
chr4 (620-771)||(27431110-27431261)
chr4 (635-732)||(27563347-27563444)
chr4 (577-732)||(27486967-27487122)
chr4 (622-732)||(27585717-27585827)
chr4 (642-732)||(27595434-27595524)
chr4 (575-732)||(27559241-27559398)
chr4 (619-771)||(27425838-27425990)
chr4 (620-728)||(27557516-27557624)
chr4 (577-732)||(27526113-27526268)
chr4 (577-732)||(27479885-27480040)
chr4 (612-731)||(27501336-27501455)
chr4 (577-732)||(27505703-27505858)
chr4 (571-713)||(27527139-27527281)
chr4 (577-734)||(27498399-27498556)
chr4 (635-732)||(27503964-27504061)
chr4 (577-732)||(27476671-27476826)
chr4 (648-731)||(27554364-27554447)
chr4 (622-732)||(27415650-27415760)
chr4 (635-732)||(27468328-27468425)
chr4 (635-732)||(27475580-27475677)
chr4 (635-728)||(27524566-27524659)
chr4 (637-729)||(27490004-27490096)
chr4 (635-731)||(27514933-27515029)
chr4 (570-732)||(27446124-27446286)
chr4 (635-732)||(27420450-27420547)
chr4 (571-732)||(27497323-27497484)
chr4 (622-771)||(27565913-27566062)
chr4 (635-732)||(27570050-27570147)
chr4 (619-731)||(27502809-27502921)
chr4 (637-732)||(17970343-17970438)
chr4 (204-385)||(27424835-27425026)
chr4 (685-731)||(27507815-27507861)
chr4 (682-732)||(27600642-27600692)
chr4 (57-166)||(27419645-27419754)
chr4 (635-732)||(27423264-27423361)
chr4 (689-734)||(27473988-27474033)
chr4 (689-732)||(27460574-27460617)
chr4 (689-732)||(27466917-27466960)
chr4 (577-732)||(27469444-27469599)
chr4 (677-732)||(27495620-27495675)
chr4 (637-728)||(27508896-27508987)
chr4 (97-159)||(27425068-27425130)
chr4 (682-728)||(27577407-27577453)
[»] chr5 (3 HSPs)
chr5 (577-732)||(1756758-1756913)
chr5 (562-761)||(1755967-1756166)
chr5 (577-731)||(1754243-1754397)
[»] chr3 (16 HSPs)
chr3 (577-732)||(55084770-55084925)
chr3 (571-728)||(38032260-38032417)
chr3 (571-728)||(38035033-38035190)
chr3 (571-728)||(38038525-38038682)
chr3 (571-728)||(50913474-50913631)
chr3 (571-728)||(38027433-38027590)
chr3 (619-732)||(38043929-38044042)
chr3 (577-732)||(38024876-38025031)
chr3 (577-732)||(38031328-38031483)
chr3 (637-732)||(50910004-50910099)
chr3 (577-732)||(50911870-50912025)
chr3 (686-732)||(48840713-48840759)
chr3 (675-732)||(38028767-38028824)
chr3 (640-732)||(50904793-50904885)
chr3 (577-732)||(38036794-38036949)
chr3 (675-732)||(38040082-38040139)
[»] chr8 (3 HSPs)
chr8 (571-728)||(21608235-21608392)
chr8 (658-732)||(21634608-21634682)
chr8 (675-732)||(21607297-21607354)
[»] chr2 (1 HSPs)
chr2 (637-732)||(3073613-3073708)


Alignment Details
Target: chr4 (Bit Score: 801; Significance: 0; HSPs: 59)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 801; E-Value: 0
Query Start/End: Original strand, 22 - 985
Target Start/End: Original strand, 27571052 - 27572014
Alignment:
Q  22 agatatatcagataatagttggctgatgtatattgtgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccagtggatcaactatac 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27571052 agatatatcagataatagttggctgatgtatattgtgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccagtggatcaactat-c 27571150  T
Q  122 caaaatgcattaacaaacatcaggtctttttcaccaatgcattgttttaccatgtctgttggccattatctcagaaggtagagtatttgcatgttcttat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571151 caaaatgcattaacaaacatcaggtctttttcaccaatgcattgttttaccatgtctgttggccattatctcagaaggtagagtatttgcatgttcttat 27571250  T
Q  222 atttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattacaatccatcaaaatacattc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571251 atttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattacaatccatcaaaatacattc 27571350  T
Q  322 attggttaattggtttgtttcagacccttagcaactatatatacactattccttgagttctcaaagcaacacaaatcttttccattctgagttataaaaa 421  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571351 attggttaattggtttgtttgagacccttagcaactatatatacactattccttgagttctcaaagcaacacaaatcttttccattctgagttataaaaa 27571450  T
Q  422 ctcaaatatttctttctcatccaatcctctgccatcatcagta-nnnnnnnngtgaggaaccataaataataaaaacaatgggtttccgcatagcaaagc 520  Q
    |||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27571451 ctcaaatatttctttctcatccaatcctctgccatcatcagtatttttttttgtgaggaaccataaatactaaaaacaatgggtttccgcatagcaaagc 27571550  T
Q  521 ttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacg 620  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||    
T  27571551 ttatcagaatgccatcattttccaaaacacaagagactgccaagggacttgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcg 27571650  T
Q  621 gtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctc 720  Q
    ||| ||||||||| ||||||| |||| ||| ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  27571651 gttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtctc 27571750  T
Q  721 acaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagcta 820  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571751 acaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagcta 27571850  T
Q  821 attactatagaaaccannnnnnnnnnctgttgaagannnnnnnattgttccgtccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaa 920  Q
    ||||||||||||||||          ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571851 attactatagaaaccattttttttttctgttgaaga-ttttttattgttccgtccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaa 27571949  T
Q  921 tgagaatgttaaattattaatgacaccaaatattgttgaaacagttgcagcttttttcatctctc 985  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571950 tgagaatgttaaattattaatgacaccaaatattgttgaaacagttgcagcttttttcatctctc 27572014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 178 - 809
Target Start/End: Complemental strand, 27419621 - 27418996
Alignment:
Q  178 tgttggccattatctcagaaggtagagtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacc 277  Q
    ||||||||||||||||| || || | |||| |||||| ||||  ||| ||||||  ||||||||||||||  |  | |||| ||||||||||||||| ||    
T  27419621 tgttggccattatctcacaatgtggggtatgtgcatgctcttccattaagcttc--ctaatccttgaaaaa-atatgtataggacaataccatgtgatcc 27419525  T
Q  278 cttgtacctaactagactctattacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttga 377  Q
    ||||| | | ||| ||| |||| |||   || |||| |||||||| || |||||||||||||   || ||||||| ||||||||||||| |||||||||     
T  27419524 cttgtccttcacttgaccctatcacagctcaccaaattacattcactgattaattggtttgtag-aggcccttagaaactatatatacattattccttgg 27419426  T
Q  378 gttctcaaagcaacacaaatcttttccattctgagttataaaaactcaaatatttctttctcatccaatcctctgccatcatcagtannnnnnnngtgag 477  Q
     |||||||| ||||| ||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||        |||||    
T  27419425 attctcaaatcaacataaatcttttgcattctgaattataagaattcaaatatttctttctcatccaatcctctgccatcatcagtatcttttt-gtgag 27419327  T
Q  478 gaaccataaataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcc 577  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  27419326 gagccatacataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagagactgccaagggacttgaagtcc 27419227  T
Q  578 caaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatca 677  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| ||| ||||  ||||||||||||||||||||    
T  27419226 caaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatca 27419127  T
Q  678 agcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagct 777  Q
    | |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||  ||| || | || ||||||||||| || |||  |    
T  27419126 atcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt-aagtgattt 27419028  T
Q  778 ctagatcatgctaatggagatttagatagatt 809  Q
     || |||||||||||||||||| |||||||||    
T  27419027 gtaaatcatgctaatggagattaagatagatt 27418996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 499 - 811
Target Start/End: Complemental strand, 27411690 - 27411379
Alignment:
Q  499 atgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtgt 598  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27411690 atgggtttccgcatagcaaagcttattagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtct 27411591  T
Q  599 atgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggata 698  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  27411590 atgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggata 27411491  T
Q  699 tgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagat 798  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || || ||||| ||| | ||| || || |||| ||||||||||||    
T  27411490 tgatcatcctatgggtggtctcacaattccttgcagcgaggatgaattccaaaacctcacatctcgtttg-agtgaactgtaaatcaagctaatggagat 27411392  T
Q  799 ttagatagattag 811  Q
    | |||||||||||    
T  27411391 taagatagattag 27411379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 204 - 823
Target Start/End: Original strand, 27566870 - 27567485
Alignment:
Q  204 gtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattaca 303  Q
    |||| |||||||||||  ||||| ||||||||||| |||||||||||| || || | ||||| |||||||| |||| || ||| | ||| | |||| |||    
T  27566870 gtatgtgcatgttcttccatttatcttcatctaatgcttgaaaatgacttccatgatacaatgccatgtgatccctggtccctcagtaggccctatcaca 27566969  T
Q  304 atccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacac--tattccttgagttctcaaagcaacacaaatcttt 401  Q
       ||||| || || |||||||| ||| ||||||||  ||| ||||||||||||||||||| ||  ||||| || |||||||||  || ||||| |||||    
T  27566970 gctcatcacaacactttcattggctaagtggtttgta-caggcccttagcaactatatatatacattattcttttagttctcaat-caccacaagtcttt 27567067  T
Q  402 tccattctgagttataaaaactcaaatatttctttctcatccaatcctctgccatcatcagtannnnnnnngtgagga-accataaataataaaaacaat 500  Q
    | |||  | | | || | || |||||||||||||||||||||||||||||  ||| |||||||         ||  |  ||||||||     ||||||||    
T  27567068 tgcatcataaatcatcagaattcaaatatttctttctcatccaatcctctaacataatcagtattttttttttggtgctaccataaa-----aaaacaat 27567162  T
Q  501 gggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtgtat 600  Q
    ||||||||| ||||| |   |||||| || | |||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||| |||    
T  27567163 gggtttccgtatagccagtattatcaaaagggcatcattttccaaaactcaaggatctagcaagggatttgaagtcccaaaaggctatctcgcagtctat 27567262  T
Q  601 gttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatg 700  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||| ||||    
T  27567263 gttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatg 27567362  T
Q  701 atcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagattt 800  Q
    ||||||| |||||||||||||||||||||||| |||| ||||  ||| || | || ||||||| |||||||||||||  || |||||| |||||||||||    
T  27567363 atcatccaatgggtggtctcacaattccttgcagcgaagatgctttcttagaactcacttctcacttgaattgagctgaaggtcatgcaaatggagattt 27567462  T
Q  801 agatagattagttgaagctaatt 823  Q
    ||||||| ||||||| |||||||    
T  27567463 agatagaatagttgaggctaatt 27567485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 487 - 823
Target Start/End: Complemental strand, 27414550 - 27414212
Alignment:
Q  487 ataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggct 586  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||| ||||| ||||||| ||||||| ||||||||||    
T  27414550 ataaaaaaaacaatgggtttccgcatagcaaagcttatcagaaagccatcattttcgtcaacacaagcatctagcaagggatttgaagtgccaaaaggct 27414451  T
Q  587 atctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaaga 686  Q
    |||| ||||| || ||||| |||| |||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||| |||||||    
T  27414450 atcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaaga 27414351  T
Q  687 agaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atc 784  Q
    ||||||||||||||||||||| ||||||||||| |||||||| ||| | || |||||||||| ||| || ||||||||| ||||||||||| |||  ||     
T  27414350 agaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaagatgaattccaaaacctcacttctcgcatgaattgagctgtagatatt 27414251  T
Q  785 atgctaatggagatttagatagattagttgaagctaatt 823  Q
    ||||||| |||| |||||||||||||||||| |||||||    
T  27414250 atgctaacggagctttagatagattagttgaggctaatt 27414212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 492 - 824
Target Start/End: Complemental strand, 27422176 - 27421841
Alignment:
Q  492 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 591  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||| ||||||||||||| |||||||||||||||||||||||    
T  27422176 aaaaacaatgggtttccgcatagcaaaacttatcagaatgccatcattttcctcaacgcaagcatctaccaagggatttgaagtcccaaaaggctatctc 27422077  T
Q  592 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 691  Q
    ||||| |||||||| |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27422076 gcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 27421977  T
Q  692 tt----ggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatg 787  Q
    ||    ||||| |||||||| | |||||||||||||||||||||| | || |||   ||| || | || |||||||| |||||||||||  || ||||||    
T  27421976 ttggatggatacgatcatccaacgggtggtctcacaattccttgcagtgaagattctttcttacaactcacttctcgattgaattgagccgtaaatcatg 27421877  T
Q  788 ctaatggagatttagatagattagttgaagctaatta 824  Q
    |||||  ||| ||||||||||||||| | ||||||||    
T  27421876 ctaat-cagacttagatagattagttaaggctaatta 27421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 492 - 813
Target Start/End: Complemental strand, 27424755 - 27424432
Alignment:
Q  492 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||  || ||| | |||||||||||||||||||||    
T  27424755 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttcgtcaacacaagcatctagtaaaggattcgaagtcccaaaaggctatctc 27424656  T
Q  592 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 691  Q
    ||||| |||||||| |||  |||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||| ||||||||| | ||||||||||    
T  27424655 gcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaat 27424556  T
Q  692 ttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atcatgct 789  Q
     ||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||||| ||| || ||||||||| ||||||||||| |||  ||||||||    
T  27424555 atggatatgatcatccaatgggtggtcttaccattccgtgcagcgaggatgaattccgaaacctcacttctcgcatgaattgagctgtagatatcatgct 27424456  T
Q  790 aatggagatttagatagattagtt 813  Q
    ||| |||||| | |||||||||||    
T  27424455 aatagagattaatatagattagtt 27424432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 570 - 728
Target Start/End: Complemental strand, 27556542 - 27556384
Alignment:
Q  570 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 669  Q
    ||||||||||||||||||||||||||| |||||||| || | |||||  || |||||||||||  | ||||  ||||||||||| | |||||||||||||    
T  27556542 tgaagtcccaaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaatta 27556443  T
Q  670 ctaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 728  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27556442 ctacatcaagcagaagaagaatttggatatgatcattctatgggtggtctcacaattcc 27556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 204 - 445
Target Start/End: Complemental strand, 27422448 - 27422210
Alignment:
Q  204 gtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattaca 303  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| ||||| | |||| |||    
T  27422448 gtatttgcatgttcttccatttaacttcatctaatccttgaaaatgacttctataagacaataccatgtgatctcttgtccctcactaggccctatcaca 27422349  T
Q  304 atccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttgagttctcaaagcaacacaaatcttttc 403  Q
       ||||||||||| |||||||| ||||||||||| |  || |||||||||||||| ||||||||| || ||| | |||| ||| ||||||| ||||||     
T  27422348 gctcatcaaaatactttcattggctaattggtttg-tagagtcccttagcaactatttatacactactctttg-ggtctc-aagtaacacaagtcttttg 27422252  T
Q  404 cattctgagttataaaaactcaaatatttctttctcatccaa 445  Q
    |||  | | |||| | || |||||||||||||||||||||||    
T  27422251 catcataaattatcagaattcaaatatttctttctcatccaa 27422210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 571 - 732
Target Start/End: Complemental strand, 27479045 - 27478884
Alignment:
Q  571 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 670  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27479045 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27478946  T
Q  671 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    || ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27478945 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 571 - 732
Target Start/End: Complemental strand, 27486105 - 27485944
Alignment:
Q  571 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 670  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27486105 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27486006  T
Q  671 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    || ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27486005 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27485944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 619 - 732
Target Start/End: Original strand, 27506724 - 27506837
Alignment:
Q  619 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 718  Q
    ||||||||||| ||| |||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||| |    
T  27506724 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggac 27506823  T
Q  719 tcacaattccttgc 732  Q
    |||| |||||||||    
T  27506824 tcaccattccttgc 27506837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 618 - 732
Target Start/End: Original strand, 27412689 - 27412803
Alignment:
Q  618 acggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggt 717  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||| | | |||||| |||||||| ||||||||||||||||| ||||||||     
T  27412689 acggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggc 27412788  T
Q  718 ctcacaattccttgc 732  Q
    ||||| |||||||||    
T  27412789 ctcaccattccttgc 27412803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 577 - 774
Target Start/End: Complemental strand, 27513932 - 27513735
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    |||||||| ||||| ||||||||||| || || | |||||  ||||||||||| ||| ||||||||||||||||| | |  || ||||||||  | || |    
T  27513932 ccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaacc 27513833  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattga 774  Q
    |||| |||||| ||| || |||||||||||| |||||||||||||| ||||||||| | || || | |||| || || | ||||||||||||||||||    
T  27513832 aagctgaagaacaatatgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaattga 27513735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 199 - 445
Target Start/End: Complemental strand, 27414809 - 27414562
Alignment:
Q  199 gtagagtatttgcatgttcttatatttagcttcatctaatcctt-gaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactct 297  Q
    |||| |||| |||||||||||  |||||||||||||||||  || ||||||||| |||||| ||||||||||||||| ||||||| ||| ||||| | ||    
T  27414809 gtagggtatgtgcatgttcttccatttagcttcatctaatagtttgaaaatgacttctataggacaataccatgtgatcccttgtccctcactaggccct 27414710  T
Q  298 attacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatataca-ctattccttgagttctcaaagcaacacaaa 396  Q
    || |||   ||||||||| | | |||||| | |||| |||  |  || ||||| ||||||||||||||| |||||| ||| |||||| |||||||||||     
T  27414709 atcacagctcatcaaaatgcttccattggctgattgattttgtagagtcccttggcaactatatatacacctattcattgtgttctc-aagcaacacaag 27414611  T
Q  397 tcttttccattctgagttataaaaactcaaatatttctttctcatccaa 445  Q
    |||||| ||| || | |||| | || |||||||  ||||||||||||||    
T  27414610 tcttttgcatcctaaattatcataattcaaataaatctttctcatccaa 27414562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 620 - 732
Target Start/End: Complemental strand, 27444907 - 27444795
Alignment:
Q  620 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 719  Q
    |||||||||| ||| |||||||||||| |||| ||| ||||||||||||| | |||||||| || ||| |||| |||||||| ||||| |||||||||||    
T  27444907 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 27444808  T
Q  720 cacaattccttgc 732  Q
    |||||||||||||    
T  27444807 cacaattccttgc 27444795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 620 - 771
Target Start/End: Complemental strand, 27431261 - 27431110
Alignment:
Q  620 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 719  Q
    |||||||||| ||| ||||||||||||||||||| | ||||||||||||  | |||||||| || ||| ||||||||||||| ||||| |  ||||||||    
T  27431261 ggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtct 27431162  T
Q  720 cacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 771  Q
    ||||||||||||| | || || |  ||| ||||| |||||||||| ||||||    
T  27431161 cacaattccttgcagagaagacgttttcttaaatattacttctcgtttgaat 27431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 635 - 732
Target Start/End: Complemental strand, 27563444 - 27563347
Alignment:
Q  635 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||||||||||||||||| |||| |||||||| || || | |||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  27563444 tatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgc 27563347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 577 - 732
Target Start/End: Original strand, 27486967 - 27487122
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| || ||||||||||| ||||||||||  |||||||||||  | || |    
T  27486967 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaacc 27487066  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||| |||||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27487067 aagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgc 27487122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 622 - 732
Target Start/End: Original strand, 27585717 - 27585827
Alignment:
Q  622 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 721  Q
    |||||||| ||  |||||||||||||||||||||| |||||||| ||  | | |||||| |||||||| ||||||||||||||||| ||||| |||||||    
T  27585717 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 27585816  T
Q  722 caattccttgc 732  Q
    | |||||||||    
T  27585817 ccattccttgc 27585827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 642 - 732
Target Start/End: Original strand, 27595434 - 27595524
Alignment:
Q  642 cttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||   ||||||| ||||||||||| ||||||||||||    
T  27595434 cttgaaccgaccattatttcaagaattactaagtcaagcagaaaaagagtttggattcaatcatcccatgggtggtcttacaattccttgc 27595524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 575 - 732
Target Start/End: Complemental strand, 27559398 - 27559241
Alignment:
Q  575 tcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaa 674  Q
    |||||||||||||||||||||| |||||||| || | |||||   | ||| |||||||  | ||||  ||||| ||| | | ||||||| | ||| |||     
T  27559398 tcccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaag 27559299  T
Q  675 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
     ||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  27559298 ccaatcagaagaagagtttggatatgatcatccaatgggtggtctcacaattccttgc 27559241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 619 - 771
Target Start/End: Original strand, 27425838 - 27425990
Alignment:
Q  619 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 718  Q
    |||| |||||| ||| ||||||||||||||||||||| ||||||||| ||| | | ||||   || ||||| ||||||||||||||||| |||||||| |    
T  27425838 cggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcc 27425937  T
Q  719 tcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 771  Q
    |||| |||||||||  |||||||| ||| | | || | || ||||||||||||    
T  27425938 tcaccattccttgcaccgaggatgtatttcaacatatgacatctcgcttgaat 27425990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 620 - 728
Target Start/End: Original strand, 27557516 - 27557624
Alignment:
Q  620 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 719  Q
    |||||||||| ||| | |||||||| |||||||||| |||||||||||| || |||||||| || ||| |||||| ||||| |||||| |||||||||||    
T  27557516 ggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtct 27557615  T
Q  720 cacaattcc 728  Q
    ||| |||||    
T  27557616 cactattcc 27557624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 577 - 732
Target Start/End: Complemental strand, 27526268 - 27526113
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | |  |    
T  27526268 ccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagcc 27526169  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||| || ||| |||||| |||||||||||| | |||||||||||| |||||||||    
T  27526168 aagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgc 27526113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 577 - 732
Target Start/End: Original strand, 27479885 - 27480040
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    |||||||||||||| ||||| || || || || | |||||  || |||||||||||  ||||||||||||||||| ||| ||| ||| | ||  | || |    
T  27479885 ccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaacc 27479984  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||| || ||| |||||| |||||||||||| |||||||||||||| |||||||||    
T  27479985 aagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgc 27480040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 612 - 731
Target Start/End: Original strand, 27501336 - 27501455
Alignment:
Q  612 aatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatg 711  Q
    ||||| |||||||||||| ||| |||||||||| ||||||||||| |||||||| ||  | || ||||| || ||| |||||| ||| |||||||| | |    
T  27501336 aatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacg 27501435  T
Q  712 ggtggtctcacaattccttg 731  Q
    ||||||||||| ||||||||    
T  27501436 ggtggtctcactattccttg 27501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 577 - 732
Target Start/End: Complemental strand, 27505858 - 27505703
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | || |    
T  27505858 ccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaacc 27505759  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||| || ||| |||||| |||||| ||||| |||||||||||||| |||||||||    
T  27505758 aagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgc 27505703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 571 - 713
Target Start/End: Original strand, 27527139 - 27527281
Alignment:
Q  571 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 670  Q
    ||||| ||||| |||||||| || ||||||||||| |||| |  || |||||||||||| ||| ||||| |||| ||||||||||  |||| ||| || |    
T  27527139 gaagtaccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgc 27527238  T
Q  671 taaatcaagcagaagaagaatttggatatgatcatcctatggg 713  Q
    | | |||||| || ||||| ||||||||||||||||| |||||    
T  27527239 tgagtcaagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 577 - 734
Target Start/End: Original strand, 27498399 - 27498556
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    ||||| || ||||| ||||| |||||||| ||   ||||| ||| |||||||| ||  |||||||||||||||||||||  || ||||| ||  | || |    
T  27498399 ccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaacc 27498498  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcgg 734  Q
    |||| || ||| |||| | |||||||||||| |||||||||||||| |||||||||||    
T  27498499 aagccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgcgg 27498556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 635 - 732
Target Start/End: Original strand, 27503964 - 27504061
Alignment:
Q  635 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||||||||||||||||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgc 27504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 577 - 732
Target Start/End: Original strand, 27476671 - 27476826
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| |||||| | || |  |    
T  27476671 ccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagcc 27476770  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||   || ||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27476771 aaagtgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgc 27476826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 648 - 731
Target Start/End: Original strand, 27554364 - 27554447
Alignment:
Q  648 ccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 731  Q
    ||||||||  ||||||||||| || |||||||| || ||| ||||||||||||||||||| | |||| ||||||||||||||||    
T  27554364 ccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttg 27554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 622 - 732
Target Start/End: Original strand, 27415650 - 27415760
Alignment:
Q  622 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 721  Q
    |||||||| ||  |||||||||||||||||||||  |||||||| ||  | | |||||| || ||||| ||||||||||||||| | |||||||| ||||    
T  27415650 tttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctca 27415749  T
Q  722 caattccttgc 732  Q
    | |||||||||    
T  27415750 ccattccttgc 27415760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 635 - 732
Target Start/End: Complemental strand, 27468425 - 27468328
Alignment:
Q  635 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||||||| |||||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27468425 tatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27468328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 635 - 732
Target Start/End: Complemental strand, 27475677 - 27475580
Alignment:
Q  635 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 635 - 728
Target Start/End: Original strand, 27524566 - 27524659
Alignment:
Q  635 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 728  Q
    ||||||| ||||||||||| | ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 27524659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 637 - 729
Target Start/End: Original strand, 27490004 - 27490096
Alignment:
Q  637 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcct 729  Q
    |||||||| ||| |||||| ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  27490004 tcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 635 - 731
Target Start/End: Original strand, 27514933 - 27515029
Alignment:
Q  635 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 731  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  27514933 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttg 27515029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 570 - 732
Target Start/End: Original strand, 27446124 - 27446286
Alignment:
Q  570 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 669  Q
    ||||||||||||||||||||| || || |||||||| || | |||||  || ||||||||||||   ||||  ||||| ||||| | ||||||||| |      
T  27446124 tgaagtcccaaaaggctatcttgcggtttatgttggagaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcatttcaagagtcg 27446223  T
Q  670 ctaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
     |||  ||| |||||||||| |||| |||||||||||  |||| ||||||| | |||||||||    
T  27446224 ttaagccaatcagaagaagagtttgaatatgatcatcgaatggatggtctctcgattccttgc 27446286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 635 - 732
Target Start/End: Original strand, 27420450 - 27420547
Alignment:
Q  635 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||||||||| |||||| | ||||||||  || || | |||||  || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27420450 tatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27420547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 571 - 732
Target Start/End: Complemental strand, 27497484 - 27497323
Alignment:
Q  571 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 670  Q
    ||||| ||||| |||||| | |||||||||||||| |||| |   |  ||||||||||| ||  | |||||||| ||||||||||| |||||| | ||      
T  27497484 gaagttccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgt 27497385  T
Q  671 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    | | |||||| || ||||| ||||||||||||||||| |  ||||| ||||| |||||||||    
T  27497384 tgagtcaagctgaggaagagtttggatatgatcatcccacaggtggcctcaccattccttgc 27497323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 622 - 771
Target Start/End: Complemental strand, 27566062 - 27565913
Alignment:
Q  622 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 721  Q
    |||||||| ||  |||||||| ||||||||||||| |||||||| || || |  ||||  || |||||   ||||||||||||||| |||||||| ||||    
T  27566062 tttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatacaagttgaggaagagcatggatatgatcatccaatgggtggcctca 27565963  T
Q  722 caattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 771  Q
    | |||||||| ||||| ||||  |||| | || | |||||| ||||||||    
T  27565962 ccattccttgtggcgaagatgtcttccaacatataacttcttgcttgaat 27565913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 635 - 732
Target Start/End: Complemental strand, 27570147 - 27570050
Alignment:
Q  635 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||||||| | |||||| | ||||||||| || || | |||||| || ||||| || |||||||||||||| |||||||| ||||| |||||||||    
T  27570147 tatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgc 27570050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 731
Target Start/End: Complemental strand, 27502921 - 27502809
Alignment:
Q  619 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 718  Q
    ||||||||||||||| | ||||| ||||| ||| | | ||||||||| || || |  ||||| |  ||||||||||||||||| ||||| ||||||||||    
T  27502921 cggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtc 27502822  T
Q  719 tcacaattccttg 731  Q
    | || ||||||||    
T  27502821 ttactattccttg 27502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 637 - 732
Target Start/End: Original strand, 17970343 - 17970438
Alignment:
Q  637 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||||||||||||||| | | ||||||| | || || | ||  ||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  17970343 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgc 17970438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 385
Target Start/End: Complemental strand, 27425026 - 27424835
Alignment:
Q  204 gtatttgcatgttcttatatttagcttcatcta--atccttgaaaatgacctctataagac--------aataccatgtgaacccttgtacctaactaga 293  Q
    ||||||| ||||||||  ||||| |||||||||  ||||||||||||||| ||||||||||        |||||||||||| ||||||| | | |||||     
T  27425026 gtatttgaatgttcttccatttaacttcatctataatccttgaaaatgacttctataagacaatagtacaataccatgtgatcccttgtccgtcactagg 27424927  T
Q  294 ctctattacaatccatcaaaatacattcattggttaattggtttgtttcagacccttagcaactatatatacactattccttgagttctcaa 385  Q
    | |||| |||   || |||||||| |||||||| |||||| |||  |  ||  |||||||  |||||||||||||||||| || ||||||||    
T  27424926 ccctatcacagctcaccaaaatactttcattggctaattgattttgtagagttccttagcttctatatatacactattccatgggttctcaa 27424835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 685 - 731
Target Start/End: Complemental strand, 27507861 - 27507815
Alignment:
Q  685 gaagaatttggatatgatcatcctatgggtggtctcacaattccttg 731  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  27507861 gaagaatttggatatgaccatccaatgggtggtcttacaattccttg 27507815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 682 - 732
Target Start/End: Original strand, 27600642 - 27600692
Alignment:
Q  682 gaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||||||||||| ||  ||||||| ||||||||||||||||||||||||    
T  27600642 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgc 27600692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 27419754 - 27419645
Alignment:
Q  57 tgcattgtcaatctgaagaaacatgagatatgtctgtagtatgtctaccagtggatcaactataccaaaatgcattaacaaacatcaggtctttttcacc 156  Q
    |||| |||||||  ||||||||||| || ||||||  || |||||||| | ||||| | ||||||| |||||||  || ||||||||||| | |||||||    
T  27419754 tgcaatgtcaattagaagaaacatgtgagatgtctaaagcatgtctacaattggattatctatacccaaatgcaagaaaaaacatcaggtttctttcacc 27419655  T
Q  157 aatgcattgt 166  Q
    | ||||||||    
T  27419654 attgcattgt 27419645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 732
Target Start/End: Original strand, 27423264 - 27423361
Alignment:
Q  635 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||||||||||||||||||| | ||||||||||||  | | |||||| || ||||| ||||| ||  ||||||| |||||||| |||||  ||||||||    
T  27423264 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgc 27423361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 734
Target Start/End: Original strand, 27473988 - 27474033
Alignment:
Q  689 aatttggatatgatcatcctatgggtggtctcacaattccttgcgg 734  Q
    |||||| |||||||||||| |||||||||||||| |||||||||||    
T  27473988 aatttgaatatgatcatccaatgggtggtctcaccattccttgcgg 27474033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 732
Target Start/End: Original strand, 27460574 - 27460617
Alignment:
Q  689 aatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||| |||||||||||| |||||||||||||| |||||||||    
T  27460574 aatttgaatatgatcatccaatgggtggtctcaccattccttgc 27460617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 732
Target Start/End: Original strand, 27466917 - 27466960
Alignment:
Q  689 aatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||| |||||||||||| |||||||||||||| |||||||||    
T  27466917 aatttgaatatgatcatccaatgggtggtctcactattccttgc 27466960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 732
Target Start/End: Original strand, 27469444 - 27469599
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| ||  ||||||| ||||| ||| ||| ||| |||||| |  | |  |    
T  27469444 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagcc 27469543  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||| |||||| |||||| |||||| ||||| ||||||||||| || |||||||||    
T  27469544 aagctgaagaacaatttgaatatgaacatccaatgggtggtctaactattccttgc 27469599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 677 - 732
Target Start/End: Original strand, 27495620 - 27495675
Alignment:
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||| |||||||| ||||||| | ||||||| |||||||||||||| |||||||||    
T  27495620 aagctgaagaagagtttggatttaatcatccaatgggtggtctcaccattccttgc 27495675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 728
Target Start/End: Original strand, 27508896 - 27508987
Alignment:
Q  637 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 728  Q
    ||||| ||||||||||| | ||||||||| ||  | ||||| || || ||||| ||||||||||||||||| | |||||| ||||| |||||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattcc 27508987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 27425130 - 27425068
Alignment:
Q  97 atgtctaccagtggatcaactataccaaaatgcattaacaaacatcaggtctttttcaccaat 159  Q
    |||||||||| || || | |||||||||||| || ||||||||||||||| | ||||||||||    
T  27425130 atgtctaccattgcattagctataccaaaattcaataacaaacatcaggtttctttcaccaat 27425068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 682 - 728
Target Start/End: Original strand, 27577407 - 27577453
Alignment:
Q  682 gaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 728  Q
    ||||||||||||||||   |||| |||||||||||||||||||||||    
T  27577407 gaagaagaatttggattcaatcaccctatgggtggtctcacaattcc 27577453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 577 - 732
Target Start/End: Complemental strand, 1756913 - 1756758
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    ||||| |||||||| |||||| ||||||| || | |  ||  ||||||||||| ||| |||||||||||||||||||||  |||||| | ||  | | ||    
T  1756913 ccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtc 1756814  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||| ||||||||||||||||||||||| || |||||||| ||||| |||||||||    
T  1756813 aagctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgc 1756758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 562 - 761
Target Start/End: Complemental strand, 1756166 - 1755967
Alignment:
Q  562 aagggacttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttc 661  Q
    |||||| ||||||||   |||||||| || ||||| |||||||  ||| ||||||  | | | |||||| || ||||||||||||| ||||| | |||||    
T  1756166 aagggatttgaagtctagaaaggctaccttgcagtctatgttgaagatcgaatgaagcagatagtgatttcaatatcatacttgaatcaaccttaatttc 1756067  T
Q  662 aagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttc 761  Q
    |||||||||||   |||||||||||  ||||  ||||||||||||| |  | ||||||||||||||| |||   ||||||||| || ||||  |||||||    
T  1756066 aagaattactatgccaagcagaagagcaattcagatatgatcatccaactgttggtctcacaattccatgcaaggaggatgaaatcttaaactttacttc 1755967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 577 - 731
Target Start/End: Complemental strand, 1754397 - 1754243
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    |||||||| ||||| || || |||||||| ||   |||||  ||||||||||| ||  ||||||||||||||||| | | ||||||| |||| |||||      
T  1754397 ccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 1754298  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 731  Q
    || | || ||| | |||| |||||||||||| |||||||||||||| ||||||||    
T  1754297 aatctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttg 1754243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 3e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 577 - 732
Target Start/End: Original strand, 55084770 - 55084925
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    |||||||| | ||| |||||||||||||| || | |||||  ||||||||||| ||  | || |||||||||||||||| ||||||||| ||  | | ||    
T  55084770 ccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtc 55084869  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
      || || |||||||||||||| |||||||| |||||||| |||||||||||||||    
T  55084870 gggcggaggaagaatttggatacgatcatccaatgggtggcctcacaattccttgc 55084925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 571 - 728
Target Start/End: Original strand, 38032260 - 38032417
Alignment:
Q  571 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 670  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||| |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38032260 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaattgc 38032359  T
Q  671 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 728  Q
    | |  ||| | ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  38032360 ttagccaatctgaagaggaattcggttattgtcatccaatgggcggtcttacaattcc 38032417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 571 - 728
Target Start/End: Original strand, 38035033 - 38035190
Alignment:
Q  571 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 670  Q
    ||||||||||||||| |||| || ||||||||||| || | |||| || ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38035033 gaagtcccaaaaggccatcttgcggtgtatgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38035132  T
Q  671 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 728  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||||||||||||||||||    
T  38035133 ttagccaagctgaagaggaattcggttattgtcatccaatgggtggtctcacaattcc 38035190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 571 - 728
Target Start/End: Original strand, 38038525 - 38038682
Alignment:
Q  571 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 670  Q
    ||||||||||||||| |||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38038525 gaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38038624  T
Q  671 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 728  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  38038625 ttagccaagctgaagaggaattcggttattgtcatccaatgggaggtcttacaattcc 38038682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 571 - 728
Target Start/End: Original strand, 50913474 - 50913631
Alignment:
Q  571 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 670  Q
    |||||||||||||||||||| |||||||||||||| || | |||||   ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  50913474 gaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgc 50913573  T
Q  671 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 728  Q
    | |  ||||| ||||| |||||||| ||   |||||| ||||||||||| ||||||||    
T  50913574 ttagccaagctgaagaggaatttggctactgtcatccaatgggtggtcttacaattcc 50913631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 571 - 728
Target Start/End: Original strand, 38027433 - 38027590
Alignment:
Q  571 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 670  Q
    ||||| ||||||||| |||| |||||||||||||| || | ||||||| ||||| |||||||  |||||| ||||||  | || |||||||||||||| |    
T  38027433 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaattgc 38027532  T
Q  671 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 728  Q
    | |  ||| | ||||| ||||| || |||  |||||| ||||||||||| ||||||||    
T  38027533 ttagccaatctgaagaggaattcggttattgtcatccaatgggtggtcttacaattcc 38027590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 619 - 732
Target Start/End: Original strand, 38043929 - 38044042
Alignment:
Q  619 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 718  Q
    ||||||||||| ||  | ||||||||||| ||| | |  |||||||| || || | ||||||||| ||||||||||||||||||||||| ||||| || |    
T  38043929 cggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcc 38044028  T
Q  719 tcacaattccttgc 732  Q
    ||||||||||||||    
T  38044029 tcacaattccttgc 38044042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 577 - 732
Target Start/End: Complemental strand, 38025031 - 38024876
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38024932  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||    
T  38024931 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgc 38024876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 577 - 732
Target Start/End: Complemental strand, 38031483 - 38031328
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38031384  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||    
T  38031383 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgc 38031328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 637 - 732
Target Start/End: Original strand, 50910004 - 50910099
Alignment:
Q  637 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||||||||||||||| | | ||||||| | ||  | |||||||  || ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  50910004 tcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgc 50910099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 577 - 732
Target Start/End: Complemental strand, 50912025 - 50911870
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    ||||| |||||||| || || |||||||| || |  |||| |||||||||||| ||    ||||||||||||||| | | ||||||| | ||  | | ||    
T  50912025 ccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtc 50911926  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||||||| |||||||||||||||||||| || |||||||| || ||||||||||||    
T  50911925 aagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgc 50911870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 686 - 732
Target Start/End: Complemental strand, 48840759 - 48840713
Alignment:
Q  686 aagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  48840759 aagaatttggatatgatcatccaatgggtggcctcacaattccttgc 48840713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 732
Target Start/End: Complemental strand, 38028824 - 38028767
Alignment:
Q  675 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||| || ||||||||||||||||| ||||| ||||| || |||||||||||||||    
T  38028824 tcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgc 38028767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 640 - 732
Target Start/End: Complemental strand, 50904885 - 50904793
Alignment:
Q  640 tacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||||||||| | | ||||||||| ||  | | || |||||| || ||||| |||||||||||||| |||||||| ||||| |||||||||    
T  50904885 tacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgc 50904793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 732
Target Start/End: Complemental strand, 38036949 - 38036794
Alignment:
Q  577 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 676  Q
    ||||| |||||||| |||||||| ||||| ||   ||||| |||||||||  | ||  |  |||||||||||||| | | ||||||| | ||  | | ||    
T  38036949 ccaaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtc 38036850  T
Q  677 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||| || |||||||| |||||||| ||||| ||||| || |||||||||||||||    
T  38036849 aagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38036794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 675 - 732
Target Start/End: Complemental strand, 38040139 - 38040082
Alignment:
Q  675 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||| || |||||||| |||||||| ||||| ||||| || |||||||||||||||    
T  38040139 tcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38040082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 571 - 728
Target Start/End: Original strand, 21608235 - 21608392
Alignment:
Q  571 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 670  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  21608235 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 21608334  T
Q  671 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 728  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  21608335 ttagccaagctgaagaggaattcggttattgtcatccaatgggaggtcttacaattcc 21608392  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 658 - 732
Target Start/End: Original strand, 21634608 - 21634682
Alignment:
Q  658 tttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    |||||||| || || | ||||||||| ||||||||||||||||||||||  ||||| ||  ||||||||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgc 21634682  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 732
Target Start/End: Complemental strand, 21607354 - 21607297
Alignment:
Q  675 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||||||||| |||||||||||||||||||| || |||||||| |||||  ||||||||    
T  21607354 tcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgc 21607297  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 637 - 732
Target Start/End: Original strand, 3073613 - 3073708
Alignment:
Q  637 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 732  Q
    ||||||||||||||| | | ||||||| | || || | ||  ||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  3073613 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgc 3073708  T

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